PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00862.1.g00100.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 586aa    MW: 65792 Da    PI: 8.8305
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00862.1.g00100.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind101.76.4e-322483382101
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   Fl+k+++++ d++++ ++sw + gnsf+v+d++ fa  +Lp++Fkh+nf+SFvRQLn+YgF+k++ ++         weF+
  Zmw_sc00862.1.g00100.1.am.mk 248 FLTKTFDLVADPATDGVVSWGRAGNSFIVWDPHVFAAVLLPRFFKHNNFSSFVRQLNTYGFRKIDPDR---------WEFA 319
                                   9****************************************************************999.........**** PP

                                   ESXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkk 101
                                   +k F +g+++ll+ ikr++
  Zmw_sc00862.1.g00100.1.am.mk 320 NKGFLRGQRHLLRMIKRRR 338
                                   *****************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004157.6E-57244337IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.2E-36244337IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.85E-34244337IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.7E-29248337IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.5E-18248271IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.5E-18286298IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340287311IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.5E-18299311IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MRQAMPASHA LADTAIELHH SSSRQDAGAA FLPALRFTSR RRIRSASCSQ SRTRTAGPAR  60
KASRGRDRDQ KNMARAVAVV VLLSAVDSEI GRGREGSPTC ARRAPISATL PAARTFRARL  120
ATNAPRGLEP SIPLLTSLVL FAVIKRSTRY LAPPTATLPE EQRSFFPARD APNWLSALTK  180
YCSSDSSWFL DTEYGSRLVG RDTMDPEMPG LATVKEEWPP EEEEEEVEDA VGAPRPMEGL  240
HEVGPPPFLT KTFDLVADPA TDGVVSWGRA GNSFIVWDPH VFAAVLLPRF FKHNNFSSFV  300
RQLNTYGFRK IDPDRWEFAN KGFLRGQRHL LRMIKRRRPP SYLAASHQQQ QQALGSYLEV  360
GHFGLDEEID RLQRDKNTLL AEVVKLRQEQ QSTKADVQAM EERLQHAETK QVQMMGFLAR  420
ALQNPDFFQQ LLAQHQDSKR KELEDAFSKK RRRPIDVVPF AASSCQTTTN RSEEQYSAFY  480
FGPSGAREFE ELSEPGSSEL ENRALNIQGL GKRKQDVQPQ AASDRNNQVG ETAELTDDFW  540
EELLSEGMRG EGELPVPETE RRSRPPGRYV HALAQKLSHL TDSTAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A6e-2524633718120Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1438452KRKELEDAFSKKRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006649439.21e-176PREDICTED: heat stress transcription factor A-2d
SwissprotQ8H7Y61e-173HFA2D_ORYSJ; Heat stress transcription factor A-2d
TrEMBLK4AJ431e-173K4AJ43_SETIT; Uncharacterized protein
STRINGSi038907m1e-172(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231