PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00854.1.g00260.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 349aa    MW: 39413.3 Da    PI: 7.9355
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00854.1.g00260.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.67.2e-51371652128
                           NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksg 81 
                                    pGfrFhPtdeelv++yL++kv++k+l++ e+ike+diyk++PwdLp +++ ++ekewyfF+ r +ky+++ r+nr+t sg
  Zmw_sc00854.1.g00260.1.am.mk  37 LPGFRFHPTDEELVTFYLRRKVARKPLSI-EIIKEMDIYKHDPWDLPkASTVGGEKEWYFFCLRGRKYRNSIRPNRVTGSG 116
                                   69***************************.89***************445556889************************* PP

                           NAM  82 yWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   +Wkatg d++++s+  +g+ +glkk+Lv+y g+a kg+ktdW+mhe+rl
  Zmw_sc00854.1.g00260.1.am.mk 117 FWKATGIDRPIYSAtnSGKSIGLKKSLVYYCGSAGKGTKTDWMMHEFRL 165
                                   ************99878889***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100555.31836193IPR003441NAC domain
SuperFamilySSF1019414.71E-5636193IPR003441NAC domain
PfamPF023653.8E-2538165IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005992Biological Processtrehalose biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006561Biological Processproline biosynthetic process
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010120Biological Processcamalexin biosynthetic process
GO:0042538Biological Processhyperosmotic salinity response
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MVAPKEFSRE AVSMDKVKSD GEALMAAGDG EEDDVVLPGF RFHPTDEELV TFYLRRKVAR  60
KPLSIEIIKE MDIYKHDPWD LPKASTVGGE KEWYFFCLRG RKYRNSIRPN RVTGSGFWKA  120
TGIDRPIYSA TNSGKSIGLK KSLVYYCGSA GKGTKTDWMM HEFRLPPAAG ADVNASPSMQ  180
EAEVWTICRI FKRNITYKRQ QQQQQQQQVW RQPAGGSGKA PPPADSSSNT GSFESDGRDD  240
YMNCLPGAAP GISHHQQLSH QVNMLNGGGR SGIFRDYQLH SHQWLNFNSL IMPDLQEQKP  300
QVNPPAMTIA FQQNHATNEF YRDGYLEDIA RFMEISDPTS TAFHDCRFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-49291998174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00310DAPTransfer from AT2G43000Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981565.10.0transcription factor JUNGBRUNNEN 1
SwissprotQ9SK552e-81NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLK4AC400.0K4AC40_SETIT; Uncharacterized protein
STRINGSi036447m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119138129
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]