PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00801.1.g00180.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 567aa    MW: 60070.4 Da    PI: 7.0095
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00801.1.g00180.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.61.1e-342082992102
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   Fl+k+y++++d++++++isw+e+g +fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+
  Zmw_sc00801.1.g00180.1.am.mk 208 FLTKTYQLVDDPAVDDVISWNEDGLTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFA 279
                                   9*****************************************************************99.........**** PP

                                   ESXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkks 102
                                   ++ F++g+k+ll++i+r+k 
  Zmw_sc00801.1.g00180.1.am.mk 280 NDCFRRGEKRLLCDIHRRKV 299
                                   *****************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.2E-37201292IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-58204297IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.72E-34205297IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.3E-20208231IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.4E-31208297IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-20246258IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340247271IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-20259271IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MRDILAHGVR AAVSGHLPLG EVLDSTMDTM CGTLELRPSL HADLAWSLHP TLARVALAFG  60
VAGVDSRRDS LAAGKAVQRK NLIAPRTRYP MIDTCPVHPG PCPRVPEPSR RKQPRKKVTE  120
PSRSSSAHHE ANHTEPNRTL PPITAVHVPM ELNPTPEDRA AGGYQCGRAH SARAGAAAAE  180
ASASEPPPPA PVPSPAEAVG QRTLPTPFLT KTYQLVDDPA VDDVISWNED GLTFVVWRPA  240
EFARDLLPKY FKHNNFSSFV RQLNTYGFRK IVPDRWEFAN DCFRRGEKRL LCDIHRRKVA  300
PAQAAPAAGL ATAAAAAASG AVTVAAAPIP MALPVTLPGS PGLSSDEQVL SSNSGSAEDH  360
PHAPSGSGGG ASGSPSSDMG EENERLRREN ARLTRELGQM KKLCNNIVLL MSKYAASQQL  420
DASAALSSVV NNSGESSEAL PQLPPLPPAL LELMPSCPAA LATAAAGLAA EPDAAARLFG  480
VSIGLKRTRE EDSGDGEEPA DHGRGSVEAK PEVSDAQQHP GSKETTPSSP DQHRWPIYRP  540
TPVYHSTRVC NGQDPGPGSD QDGSSSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-2420029713120Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957414.11e-180PREDICTED: heat stress transcription factor B-2c-like isoform X1
SwissprotQ652B01e-145HFB2C_ORYSJ; Heat stress transcription factor B-2c
TrEMBLA0A0A9DMW61e-180A0A0A9DMW6_ARUDO; Uncharacterized protein
STRINGSi030094m1e-179(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394