PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00789.1.g00240.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 363aa    MW: 37892 Da    PI: 10.3387
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00789.1.g00240.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP109.83.9e-34611793125
                           TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssasec..eae 76 
                                   g+kdrhsk++T++g RdRRvRls+++a++f+dLqd+LGfd++sk+ieWL+++a  ai  l+ +            +  e++
  Zmw_sc00789.1.g00240.1.sm.mk  61 GGKDRHSKVYTAKGIRDRRVRLSVPTAIQFYDLQDRLGFDQPSKAIEWLINAAAGAIERLPALdpaafA------AapEPG 135
                                   78*************************************************************444330......233222 PP

                           TCP  77 sssssasnsssgkaaksaakskksqksaasalnlak.esrakarararer 125
                                   +   + ++ s       +  s+ s++s+ s l+l++ +sr    + +r+r
  Zmw_sc00789.1.g00240.1.sm.mk 136 EAATKRQQGSV------SGGSSTSETSKGSELSLSRsDSRGGGASASRDR 179
                                   22222221111......112223333333334444444443333333333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136932.45262120IPR017887Transcription factor TCP subgroup
PfamPF036343.9E-3462175IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MENGAAGDGA SGRPHGGAKR GRGGVMRGSE TETAWGQPPA LLPPPQGAGT ASRICRVGRG  60
GGKDRHSKVY TAKGIRDRRV RLSVPTAIQF YDLQDRLGFD QPSKAIEWLI NAAAGAIERL  120
PALDPAAFAA APEPGEAATK RQQGSVSGGS STSETSKGSE LSLSRSDSRG GGASASRDRD  180
VTVASTSTQA ASFTELLTGA AEHRQAWQPQ PNVSPAATHT EKGANGLSTH VFSAPTVVKF  240
GNAPPFGMVP AQPLNFPTPV EMPHFSLAHH ALAAASAPAG DYNFNFSVSS GFLGANRGTL  300
QSNPQKNFSG HHQQQLQRLE GQFLFGYAAA AAHPSSENQL NASAAIQLWD GFRHPGMKEK  360
SKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-2567121155Putative transcription factor PCF6
5zkt_B4e-2567121155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008644443.11e-164transcription factor PCF6
SwissprotQ10CE82e-94PCF6_ORYSJ; Transcription factor PCF6
TrEMBLA0A1D6GG321e-163A0A1D6GG32_MAIZE; Transcription factor TCP2
STRINGGRMZM2G089361_P011e-164(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30943271