PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00780.1.g00040.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 277aa    MW: 30732.7 Da    PI: 7.6393
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00780.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP108.31.1e-33113203273
                           TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................. 65 
                                   ++++drhski T++g RdRR+Rls+ +a+ fF+Lqd+LGfdk+skt++WLl q+kpai+ l +t                 
  Zmw_sc00780.1.g00040.1.am.mk 113 PVRTDRHSKIRTAQGVRDRRMRLSVGVARDFFALQDRLGFDKASKTVNWLLIQSKPAIDSLCDTsmpgapvfgptvvkgkk 193
                                   6899************************************************************44444444444444444 PP

                           TCP  66 ..ssssasec 73 
                                     +sss+  c
  Zmw_sc00780.1.g00040.1.am.mk 194 geGSSSSPGC 203
                                   4333333333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.8E-31115178IPR005333Transcription factor, TCP
PROSITE profilePS5136932.499115173IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MLPHYPGNPP RRHHHHHQCV YQQEQPLIPN PTAAFLMPAT ASWDEYGGQI FPAADMYNQQ  60
ETLEAVLRQA VTAPRQQDHH PAVERELESS RDGAAPAVDD GVAPAAVVPR RRPVRTDRHS  120
KIRTAQGVRD RRMRLSVGVA RDFFALQDRL GFDKASKTVN WLLIQSKPAI DSLCDTSMPG  180
APVFGPTVVK GKKGEGSSSS PGCFKDTRER VRSRGALDPA AAFMEDRGGS VLDWNMSEAA  240
ATAPAAMELT QPMEGLEYYQ YYQLEEMMRC NNGVLPR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973503.22e-95transcription factor TB1
TrEMBLA0A1E5VGN22e-79A0A1E5VGN2_9POAL; Uncharacterized protein
STRINGSi015230m2e-76(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40523172