PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00770.1.g00090.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 373aa    MW: 39520.6 Da    PI: 7.9051
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00770.1.g00090.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.2e-20147196255
                             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                     +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa a+++a+++++g
  Zmw_sc00770.1.g00090.1.sm.mkhc 147 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEDAAIAYDEAALRFKG 196
                                     7********.**********94....45***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.9E-33146205IPR001471AP2/ERF domain
CDDcd000183.20E-30147205No hitNo description
SMARTSM003804.8E-38147210IPR001471AP2/ERF domain
PfamPF008471.8E-13147196IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-22147205IPR016177DNA-binding domain
PROSITE profilePS5103224.711147204IPR001471AP2/ERF domain
PRINTSPR003671.8E-11148159IPR001471AP2/ERF domain
PRINTSPR003671.8E-11170186IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MPGRRRIDPS SCSDVGTRRD RPLPANEEEE EDQPRPPAAA KHELQEEEYP AVQHGGSSTF  60
SGGGSSSSVV VPHGAGAPST PEAYAQYYYS ARADQDASAV ASALAHVIRA SPDQLNPPQG  120
FYSPAEAPQH PGQTAAAGEE EQGRRRHYRG VRQRPWGKWA AEIRDPKKAA RVWLGTFDTA  180
EDAAIAYDEA ALRFKGTKAK LNFPERVQGR TDLGFLVTRG IPDRHGHPSP AAGVTLAMPP  240
PQHHQQLQHY QQTVVPYPDL MQYAQLLQGG RGRGGAHQQQ QAQFMVMGAG ARGGGVNLPF  300
GVAVSPPSSS AAQILDFSTQ QLIRPGPPPS PAAAMSTSSA GAPSTPSSSS ATMASSPSGS  360
AWPYGGEQKN KDA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-26146208467ATERF1
3gcc_A2e-26146208467ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825288.11e-109uncharacterized protein LOC112900671
TrEMBLA0A3L6PS871e-114A0A3L6PS87_PANMI; AT-rich interactive domain-containing protein 1A-like isoform X1
STRINGSi010289m1e-103(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44473571