PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00723.1.g00340.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bZIP
Protein Properties Length: 281aa    MW: 30978 Da    PI: 7.765
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00723.1.g00340.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.38.8e-102461744
                                    HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                          bZIP_1  7 errkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44
                                     rr+++NReAAr+sR+RKka++++Le    +L +  ++
  Zmw_sc00723.1.g00340.1.am.mkhc 24 LRRLAQNREAARKSRLRKKAYVQQLESSKLKLAQLEQE 61
                                    69************************855444444444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.6E-81665No hitNo description
SMARTSM003381.2E-41881IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.8182064IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.0E-72365No hitNo description
PfamPF001708.1E-72463IPR004827Basic-leucine zipper domain
PROSITE patternPS0003602540IPR004827Basic-leucine zipper domain
PfamPF141441.1E-33104179IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MADASSRTDT SIVLDDNDKN QTMLRRLAQN REAARKSRLR KKAYVQQLES SKLKLAQLEQ  60
ELQKARQQGI FISSSGDQTH AMSGNGALTF DIEYARWLEE QNKQINELRS AVNAHASDSD  120
LRLIVDGILA HYDEIFKVKG VAAKADVFHI LSGMWKTPAE RCFLWLGGFR PSELLKLLAT  180
HLEPLTEQQT LGLNNLQQSS QQAEDALSQG MEALQQSLAE TLAGSLGPSG SSGNVANYMG  240
QMAMAMGKLG TLENFLRQAS ITVISFTGQQ SMRFSRSSGH T
Functional Description ? help Back to Top
Source Description
UniProtPlays a negative role in rice basal defense responses to the bacterial blight pathogen Xanthomomas oryzae pv. oryzae (Xoo). May function in both positive and negative regulation of rice defense genes. Binds DNA in vitro (PubMed:16045470). Acts as transcriptional activator when bound to NPR1/NH1 in vitro (PubMed:22353606). Binds to the promoter sequence of CRK10 in vitro (PubMed:27176732). {ECO:0000269|PubMed:16045470, ECO:0000269|PubMed:22353606, ECO:0000269|PubMed:27176732}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001333859.11e-177uncharacterized protein LOC100279481
RefseqXP_008651318.11e-177uncharacterized protein LOC100279481 isoform X2
RefseqXP_008651320.11e-177uncharacterized protein LOC100279481 isoform X2
RefseqXP_020396043.11e-177uncharacterized protein LOC100279481 isoform X2
RefseqXP_020396044.11e-177uncharacterized protein LOC100279481 isoform X2
SwissprotQ7X9931e-165TGA21_ORYSJ; Transcription factor TGA2.1
TrEMBLA0A3L6E4R91e-176A0A3L6E4R9_MAIZE; Transcription factor TGA2.1
TrEMBLC0HGY01e-176C0HGY0_MAIZE; Transcription factor TGA6
TrEMBLK4JBS21e-176K4JBS2_MAIZE; BZIP-type transcription factor (Fragment)
STRINGGRMZM2G361847_P011e-177(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48638185
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Chern M, et al.
    A rice transient assay system identifies a novel domain in NRR required for interaction with NH1/OsNPR1 and inhibition of NH1-mediated transcriptional activation.
    Plant Methods, 2012. 8(1): p. 6
    [PMID:22353606]
  4. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]
  5. Chern M, et al.
    A Genetic Screen Identifies a Requirement for Cysteine-Rich-Receptor-Like Kinases in Rice NH1 (OsNPR1)-Mediated Immunity.
    PLoS Genet., 2016. 12(5): p. e1006049
    [PMID:27176732]