PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00641.1.g00070.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MIKC_MADS
Protein Properties Length: 256aa    MW: 29001.8 Da    PI: 8.8906
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00641.1.g00070.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.18.8e-32958150
                                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                                  krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gklye+ 
  Zmw_sc00641.1.g00070.1.sm.mk  9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFG 58
                                  79**********************************************95 PP

2K-box102.55.6e-3478171699
                         K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke 86 
                                   ++++  ++++s++qe++kL+++ e Lqr+qRhllGedL++Ls+keLqqLe+qLe +l++ R++K++l++eq+eel++ke+ 
  Zmw_sc00641.1.g00070.1.sm.mk  78 DTNNPLSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALTQARQRKTQLMMEQVEELRRKERH 158
                                   455566788************************************************************************ PP

                         K-box  87 lqeenkaLrkkle 99 
                                   l e n++L+ +l+
  Zmw_sc00641.1.g00070.1.sm.mk 159 LGEMNRQLKVQLD 171
                                   ********98876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.571161IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-41160IPR002100Transcription factor, MADS-box
CDDcd002653.65E-46275No hitNo description
SuperFamilySSF554551.7E-33281IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.1E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-333859IPR002100Transcription factor, MADS-box
PfamPF014863.6E-3084170IPR002487Transcription factor, K-box
PROSITE profilePS5129717.3886176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009553Biological Processembryo sac development
GO:0009911Biological Processpositive regulation of flower development
GO:0010094Biological Processspecification of carpel identity
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048455Biological Processstamen formation
GO:0048459Biological Processfloral whorl structural organization
GO:0048509Biological Processregulation of meristem development
GO:0048833Biological Processspecification of floral organ number
GO:0080060Biological Processintegument development
GO:0080112Biological Processseed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFGSA  60
GVTKTLERYQ HCCYNVQDTN NPLSESQSWY QEMSKLRAKF EALQRTQRHL LGEDLGPLSV  120
KELQQLEKQL ECALTQARQR KTQLMMEQVE ELRRKERHLG EMNRQLKVQL DAEGSSNYRT  180
LQQAAWPAPG GGAVVEHDGA TFQLQQQPTH SAAMDGEPTL QIGFPHHQFM SSEPSNNAPR  240
SSAPGGDNGF MLGWVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_D5e-228817419104Developmental protein SEPALLATA 3
4ox0_C5e-228817419104Developmental protein SEPALLATA 3
4ox0_B5e-228817419104Developmental protein SEPALLATA 3
4ox0_A5e-228817419104Developmental protein SEPALLATA 3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00315DAPTransfer from AT2G45650Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953459.11e-163PREDICTED: MADS-box transcription factor 6
SwissprotQ6EU391e-147MADS6_ORYSJ; MADS-box transcription factor 6
TrEMBLK3YV641e-163K3YV64_SETIT; Uncharacterized protein
STRINGSi018160m1e-162(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41873566