PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00630.1.g00160.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 273aa    MW: 29595.2 Da    PI: 10.4764
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00630.1.g00160.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.7e-1897145355
                           AP2   3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   ++GVr ++ +g+++AeIrd +     + kr +lg+f+taeeAa+ ++ a+ +l+g
  Zmw_sc00630.1.g00160.1.am.mk  97 FRGVRLRP-WGKYAAEIRDpW-----QrKRLWLGTFDTAEEAAAVYDDAAVRLKG 145
                                   8*******.**********77.....44***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.94496153IPR001471AP2/ERF domain
SMARTSM003802.4E-3496159IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-2897154IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-2197155IPR016177DNA-binding domain
PfamPF008471.7E-997145IPR001471AP2/ERF domain
PRINTSPR003672.2E-997108IPR001471AP2/ERF domain
CDDcd000181.50E-1897155No hitNo description
PRINTSPR003672.2E-9119135IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MSSPSDASAA GRSRRVSLPL PHPKRVRVSF VDADATDTDS SGDEDERGNR RVREVIEIDV  60
QAASVPAKRS RRALPPHVVL ARRHRAKAAG AGLRRPFRGV RLRPWGKYAA EIRDPWQRKR  120
LWLGTFDTAE EAAAVYDDAA VRLKGSNAVT NFPSSVAAAE APARSSRKER RPRGGLVGDA  180
ASEAHPSPQP PSPPQPQART GEAVPVRELA PPTSVLRYAD EVALPAFDFF YGGFGELAAA  240
APSKAAEFEW MPWWEGEEFV TSVVTTASAV TVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-1995160470ATERF1
3gcc_A3e-1995160470ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804895.13e-77ethylene-responsive transcription factor CRF4-like
TrEMBLA0A2T7EG768e-77A0A2T7EG76_9POAL; Uncharacterized protein
TrEMBLA0A3L6RFM98e-77A0A3L6RFM9_PANMI; Ethylene-responsive transcription factor CRF3-like
STRINGPavir.Ia04256.1.p3e-73(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131402226