PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00625.1.g00160.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 267aa    MW: 29241.9 Da    PI: 8.4077
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00625.1.g00160.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.95.1e-33611821128
                             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 
                                     lp GfrF+Ptdeel+ +yL++k+ + +l++ ++i+ +d+ +++PwdL       ++e +fF+  ++++   +r  ra+ 
  Zmw_sc00625.1.g00160.1.am.mkhc  61 LPIGFRFRPTDEELLLHYLRRKALACPLPA-DIIPVADLARLHPWDLV-PPGDADEERFFFHLPETRHW--RRGGRAAG 135
                                     699***************************.99**************4.34456789999999988765..6999**** PP

                             NAM  80 sgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                     +g+W+a+gk+k v+s   ++ vg k+tLvf    ++ g++tdWvmheyrl
  Zmw_sc00625.1.g00160.1.am.mkhc 136 TGVWRASGKEKLVVSPrCKRPVGAKRTLVFC---HQGGKRTDWVMHEYRL 182
                                     **************9877889*********9...678899********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.15E-4157218IPR003441NAC domain
PROSITE profilePS5100540.82461219IPR003441NAC domain
PfamPF023654.3E-2162182IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
RSIEAARGAE EIHRSQQIRS LLPPSVSESI GWDLVRASLA MEARQPRQAG GGGGRVGLAG  60
LPIGFRFRPT DEELLLHYLR RKALACPLPA DIIPVADLAR LHPWDLVPPG DADEERFFFH  120
LPETRHWRRG GRAAGTGVWR ASGKEKLVVS PRCKRPVGAK RTLVFCHQGG KRTDWVMHEY  180
RLLPAGLLVH NPSSGPHVTS CHGAAAGAED WVVCRIFKRT KPGNGGRGRE EEVEEIPSSP  240
SSCVTDNSSH SDHEEEGEQS SSGDSRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-266121917165NO APICAL MERISTEM PROTEIN
1ut4_B2e-266121917165NO APICAL MERISTEM PROTEIN
1ut7_A2e-266121917165NO APICAL MERISTEM PROTEIN
1ut7_B2e-266121917165NO APICAL MERISTEM PROTEIN
3swm_A2e-266121920168NAC domain-containing protein 19
3swm_B2e-266121920168NAC domain-containing protein 19
3swm_C2e-266121920168NAC domain-containing protein 19
3swm_D2e-266121920168NAC domain-containing protein 19
3swp_A2e-266121920168NAC domain-containing protein 19
3swp_B2e-266121920168NAC domain-containing protein 19
3swp_C2e-266121920168NAC domain-containing protein 19
3swp_D2e-266121920168NAC domain-containing protein 19
4dul_A2e-266121917165NAC domain-containing protein 19
4dul_B2e-266121917165NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184279.12e-79NAC domain-containing protein 83-like
TrEMBLA0A0A9GFU06e-83A0A0A9GFU0_ARUDO; Uncharacterized protein
STRINGPavir.Eb03721.1.p3e-81(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82333047