PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00625.1.g00040.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 276aa    MW: 28438.8 Da    PI: 6.2495
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00625.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP79.68.4e-251612487
                             TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsss 87
                                    ++a+caar+F+L++eLG+++d++t++WLlqqa+pai ++tgt++++as+    +s+ s  ++++
  Zmw_sc00625.1.g00040.1.sm.mkhc  1 MPALCAARIFQLTRELGHKSDGETVQWLLQQAEPAIVAATGTGTIPASAL---ASVPSLPSPNA 61
                                    9*********************************************9665...44444443333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136920.931139IPR017887Transcription factor TCP subgroup
PfamPF036341.0E-191168IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MPALCAARIF QLTRELGHKS DGETVQWLLQ QAEPAIVAAT GTGTIPASAL ASVPSLPSPN  60
AALARPHHHH MWAPPAASAG FSSAGFLNSA AGGADAAGIG GLMQRMGLPA GLDMSGGGAA  120
GGHIGFAPMF TGHAAAGVPG LELGLSQDGH IGVLAPQSLS QFYHHVGAAG GSGQLQHPHQ  180
RHQHQHQQQE DGEDEREDAE SDEESGQGLD LLWGLVAGSR SSSVLVYSHY LGDDRRSLCS  240
HFQIKMTGTG CPVISEGKKC EGVLLLYTGS MIVLAN
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456872.14e-82transcription factor TCP20
SwissprotQ9LSD55e-33TCP20_ARATH; Transcription factor TCP20
TrEMBLA0A0A8YXQ04e-89A0A0A8YXQ0_ARUDO; Uncharacterized protein
STRINGSb03g044320.11e-81(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28643269
Publications ? help Back to Top
  1. Zhu P, et al.
    Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972
    [PMID:27708161]
  2. Wu JF, et al.
    LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
    Nat Commun, 2016. 7: p. 13181
    [PMID:27734958]
  3. Guan P, et al.
    Interacting TCP and NLP transcription factors control plant responses to nitrate availability.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424
    [PMID:28202720]
  4. Guan P
    Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 1697
    [PMID:29033968]
  5. Zhang N, et al.
    MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis.
    Plant J., 2018. 93(1): p. 66-78
    [PMID:29086441]
  6. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]
  7. Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K
    Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis.
    Microbes Environ., 2017. 32(4): p. 314-323
    [PMID:29187692]