PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00607.1.g00060.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family RAV
Protein Properties Length: 398aa    MW: 43888.3 Da    PI: 10.4947
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00607.1.g00060.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.31.6e-121866155
                           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                                  s+ykGV   + +grW A+I++      r +r++lg+f  ++eAa+a++ a+++++g
  Zmw_sc00607.1.g00060.1.am.mk 18 SRYKGVVPQP-NGRWGAQIYE------RhQRVWLGTFTGEDEAARAYDVAAQRFRG 66
                                  78****9888.8*********......44**********99*************98 PP

2B393.12e-29143242192
                                   EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkang 73 
                                   f+k  tpsdv+k++rlv+pk++ae+h          ++ +++ l +ed  g++W+++++y+++s++yvltkGW++Fvk++g
  Zmw_sc00607.1.g00060.1.am.mk 143 FDKMVTPSDVGKLNRLVIPKQHAEKHfplrlpasTVVECKGVLLCFEDAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKG 223
                                   8999*************************9998866666999*************************************** PP

                                   --TT-EEEEEE-SSSEE.. CS
                            B3  74 LkegDfvvFkldgrsefel 92 
                                   L++gD + F+++   e++l
  Zmw_sc00607.1.g00060.1.am.mk 224 LRAGDAIGFYRSAAGEQQL 242
                                   **********776555545 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.5E-81866IPR001471AP2/ERF domain
CDDcd000185.97E-241874No hitNo description
SuperFamilySSF541711.5E-161874IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-191974IPR001471AP2/ERF domain
PROSITE profilePS5103220.2051974IPR001471AP2/ERF domain
SMARTSM003802.2E-251980IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.0E-40135258IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-29140247IPR015300DNA-binding pseudobarrel domain
CDDcd100171.24E-28141235No hitNo description
PROSITE profilePS5086313.563143248IPR003340B3 DNA binding domain
SMARTSM010194.5E-22143249IPR003340B3 DNA binding domain
PfamPF023622.8E-26143244IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MDSTSCLLDX XXXKLPSSRY KGVVPQPNGR WGAQIYERHQ RVWLGTFTGE DEAARAYDVA  60
AQRFRGRDAV TNFRSLGDSS DPDAAAELRF LASRTKAEVV DMLRKHTYLD ELAQNRRAFA  120
AVCPSPPPLP SKNPSASARE HLFDKMVTPS DVGKLNRLVI PKQHAEKHFP LRLPASTVVE  180
CKGVLLCFED AAGKVWRFRY SYWNSSQSYV LTKGWSRFVK EKGLRAGDAI GFYRSAAGEQ  240
QLYIDCKVRS TTRTSSSTAG PVKAVRLFGV DLLTTPRPAS AALPVQGEMT VAMKNKRPGE  300
FIITSSTPPH MLFKKQCSSN LPFSHRLCLH AFASARPRHS RAARISGPAP LFPRLVDVLP  360
PFSPAQVYTV RIQAVPQGTL EATVATPLCN GLVSASRA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A9e-5214025711125DNA-binding protein RAV1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00025PBMTransfer from AT1G68840Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807648.11e-161AP2/ERF and B3 domain-containing protein Os05g0549800
SwissprotQ6L4H41e-141Y5498_ORYSJ; AP2/ERF and B3 domain-containing protein Os05g0549800
TrEMBLA0A2T7EAR21e-161A0A2T7EAR2_9POAL; Uncharacterized protein
STRINGPavir.J13012.1.p1e-159(Panicum virgatum)
STRINGSi024576m1e-158(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]