PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00602.1.g00310.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LBD
Protein Properties Length: 229aa    MW: 24323 Da    PI: 6.064
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00602.1.g00310.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.52.6e-3971071100
                          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78 
                                     +C aCk+lrrkC+++Cv+apyf++eq +++fa++hk+FGasn +kll++lp  +r++a+ ++ yeA+ar+rdP+yG+v+
  Zmw_sc00602.1.g00310.1.sm.mkhc   7 PCGACKFLRRKCVRGCVFAPYFCHEQgAAHFAAIHKVFGASNASKLLAHLPLADRPEAAVTISYEAQARLRDPIYGCVA 85 
                                     7*************************89*************************************************** PP

                          DUF260  79 vilklqqqleqlkaelallkee 100
                                     +i++lqqq+++l+a+la+lk++
  Zmw_sc00602.1.g00310.1.sm.mkhc  86 HIFALQQQVMTLQAQLASLKAQ 107
                                     *****************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.2056108IPR004883Lateral organ boundaries, LOB
PfamPF031955.4E-377105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MTGFGSPCGA CKFLRRKCVR GCVFAPYFCH EQGAAHFAAI HKVFGASNAS KLLAHLPLAD  60
RPEAAVTISY EAQARLRDPI YGCVAHIFAL QQQVMTLQAQ LASLKAQAAQ GQGVHEDAKG  120
FMGSAAEQLG YCYSWYSNSN GGGASAAAPA AQPCAYSNGG LTALLESDYM QQSLYHAGSD  180
DDGQQAMAYE AAVESSSFGA EESGWRSSSG YQDCEDLQSV AYAYLNHRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-3431017104LOB family transfactor Ramosa2.1
5ly0_B2e-3431017104LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation (PubMed:15829602, PubMed:15960615). Acts as positive regulator of lateral root formation. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1 (PubMed:15829602). Involved in auxin-mediated cell dedifferentiation, and may promote the initial cell division in the pericycle cells adjacent to the peripheral vascular cylinder at the base of the stem (PubMed:15960615). May act upstream of the gene regulatory network controlling adventitious root (crown) development (PubMed:21806801). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615, ECO:0000269|PubMed:21806801}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin (PubMed:15829602, PubMed:15960615). Induced by ethylene (PubMed:15960615). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797613.11e-132LOB domain-containing protein CRL1-like
SwissprotQ5UG131e-104LBD_ORYSJ; LOB domain-containing protein CRL1
TrEMBLA0A2S3IU951e-130A0A2S3IU95_9POAL; Uncharacterized protein
TrEMBLA0A2T7CHM31e-130A0A2T7CHM3_9POAL; Uncharacterized protein
STRINGPavir.Ib00283.1.p1e-134(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25013893
Publications ? help Back to Top
  1. Coudert Y,PĂ©rin C,Courtois B,Khong NG,Gantet P
    Genetic control of root development in rice, the model cereal.
    Trends Plant Sci., 2010. 15(4): p. 219-26
    [PMID:20153971]
  2. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  3. Coudert Y, et al.
    Transcript profiling of crown rootless1 mutant stem base reveals new elements associated with crown root development in rice.
    BMC Genomics, 2011. 12: p. 387
    [PMID:21806801]