PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00602.1.g00300.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LBD
Protein Properties Length: 411aa    MW: 43948 Da    PI: 9.9909
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00602.1.g00300.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260113.51.4e-35226315189
                        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 
                                   +C aCk+lrrkCa++Cv+ap+f+ae+ +++fa++hk+FGasn  kll+++ + +r++a+++++yeA+ar+rdPvyG+v++i
  Zmw_sc00602.1.g00300.1.am.mk 226 PCGACKFLRRKCAAECVFAPHFCAEDgTAQFAAIHKVFGASNAAKLLQQVAPGDRSEAAATVTYEAQARLRDPVYGCVAHI 306
                                   7***********************9989***************************************************** PP

                        DUF260  81 lklqqqleq 89 
                                   ++lqqq+ +
  Zmw_sc00602.1.g00300.1.am.mk 307 FALQQQVIS 315
                                   ******865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.233225326IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-34226314IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MLEALIESSM IKEVLMVSYF GSFGRQHVQI SAELDRPRNL LQSTNKLASV YQTKGEAINK  60
RSKRTRGRRQ EKAAESTYYE LGRGQTRPSK KAGGIRRTKV AAAALSSGVP AHGRRNRHPL  120
LIDCPFPSPL RIDGEPTATR PPPPSPIASS WRHPPLPESQ LLLKLGHLGL VLNEVSFKVG  180
HPLRAYSSNT GVGWDVGGQK RGARAAVRES ETAMASSAGG GAPGSPCGAC KFLRRKCAAE  240
CVFAPHFCAE DGTAQFAAIH KVFGASNAAK LLQQVAPGDR SEAAATVTYE AQARLRDPVY  300
GCVAHIFALQ QQVISNTRLY LKVHSLGLLA APPAVATLQV QVLQAKAQVA QTVATAGAQA  360
AGSPLLQRWQ MEPESLSTQS SGCYSAPSGD GSASMQEMYC FGEQEEGSYT R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-29224313997LOB family transfactor Ramosa2.1
5ly0_B8e-29224313997LOB family transfactor Ramosa2.1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102623344