PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00587.1.g00120.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LBD
Protein Properties Length: 636aa    MW: 69591.9 Da    PI: 9.3265
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00587.1.g00120.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260113.81.1e-353804801101
                        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 
                                   aCaaCk+ r +C+++C+la+yfpaeq++ f  vh+lFG++++l++l+++p+e  ++am+++++eAeara+dPv+G+vg+i+
  Zmw_sc00587.1.g00120.1.am.mk 380 ACAACKYRRARCTPECPLARYFPAEQNHLFVSVHRLFGVDKILRTLREVPPEYAREAMRTMIFEAEARASDPVSGCVGIIR 460
                                   7******************************************************************************** PP

                        DUF260  82 klqqqleqlkaelallkeel 101
                                   ++q++++ ++ el +l++++
  Zmw_sc00587.1.g00120.1.am.mk 461 QYQHEVSVANDELMALRHKI 480
                                   *************9999875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.621379480IPR004883Lateral organ boundaries, LOB
PfamPF031952.8E-34380477IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
MRTKGRSEEL LERIVLSFFT EELKQQRHFE GNTRNSVLLK AIETGQYEER REARSPAPWD  60
RLKKQRHAKT LKKNATPLLD AIDAPFKFKP RTLLPFSPRD ELLYLSPTSP RLLTVTAFRA  120
GLHGRHSRIG GNSIECCICI EVSSPATVRA IQCRGRIALG KQRPVTDEKG SAARFSGRTP  180
NLSGSGNHDD DDVSERSPPW NQSDSGIPRS APVAHREREI AEEARTASAG SWVVRVVNCC  240
GEEQQWRTCS SPPLAASHTS TGQAVVHDGN WSMANGHWRA APSPFGPWKE DPIELALYSR  300
HNFSRRAGDA TREERGCLQR RRSRRPRLRR PPCTMSSSSN PPPDHTDGSD ASHVGSASSS  360
PPPSGAAGSS ERRQNYARSA CAACKYRRAR CTPECPLARY FPAEQNHLFV SVHRLFGVDK  420
ILRTLREVPP EYAREAMRTM IFEAEARASD PVSGCVGIIR QYQHEVSVAN DELMALRHKI  480
ATCRSRADGG LPLADPAIPA VPEQDNVRTR DALDGGGAAQ EPAHSRQPAA GGLPLAYPAT  540
RAAPEQNNVR TTDELDSGGA AQEPVHGRQP AAGGLPLAGA GVAVVDDQQQ HHNAHKAPDL  600
EVTIAEHQYT TPVMAASSSR KRRKVAAPVV KHDADP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-223775008131LOB family transfactor Ramosa2.1
5ly0_B1e-223775008131LOB family transfactor Ramosa2.1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1318324QRRRSRR