PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00524.1.g00060.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 323aa    MW: 35064.4 Da    PI: 8.7469
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00524.1.g00060.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.61.6e-32301222103
                                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEE CS
                    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiwe 80 
                                     Fl+k+++++e+++++e++sw e+g+sfvv+++ efa+++Lp +Fkh nf+SFvRQLn+YgF+kv  ++         we
  Zmw_sc00524.1.g00060.1.sm.mkhc  30 FLTKTHQMVEERATDEVVSWAEQGRSFVVWKPVEFARDLLPLHFKHCNFSSFVRQLNTYGFRKVVPDR---------WE 99 
                                     9*****************************************************************99.........** PP

                                     EEESXXXXXXXXXXXXXXXXXXX CS
                    HSF_DNA-bind  81 FkhksFkkgkkellekikrkkse 103
                                     F++++F++g++ l++ i+r+ks+
  Zmw_sc00524.1.g00060.1.sm.mkhc 100 FANENFRRGEQGLMSGIRRRKST 122
                                     ********************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.18E-3126119IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-5326119IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.6E-3526119IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.1E-2830119IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-173053IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-176880IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406993IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-178193IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MAGAVAAAGQ PPKGGGRGGG GGGGGGPAPF LTKTHQMVEE RATDEVVSWA EQGRSFVVWK  60
PVEFARDLLP LHFKHCNFSS FVRQLNTYGF RKVVPDRWEF ANENFRRGEQ GLMSGIRRRK  120
STTPQSAKSG GCAVNVAFSP PLPPLPPTTS GGNDRSSSST SSPPRADLTS ENEQLKKDNH  180
TLAAELAQAR RHCEGLLGFL SRFLDVRQLD LGLLMQEDMR AAGDRQQCRA VADQDCSDEE  240
KSVKLFGVLL KDAATKRARC QEAAASERPI KMIRVCEPGF GVPSSGPGQY GGRDIARKTA  300
RLYACAYEYV HVQVMEDDHN SQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8k_B2e-20301235109Heat shock factor protein 2
5d8l_B2e-20301235109Heat shock factor protein 2
5d8l_D2e-20301235109Heat shock factor protein 2
5d8l_F2e-20301235109Heat shock factor protein 2
5d8l_H2e-20301235109Heat shock factor protein 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11422GGRGGGGGG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957012.11e-137PREDICTED: heat stress transcription factor B-1-like
SwissprotQ67TP91e-127HSFB1_ORYSJ; Heat stress transcription factor B-1
TrEMBLK3ZVI01e-137K3ZVI0_SETIT; Uncharacterized protein
STRINGSi030611m1e-137(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394