PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00522.1.g00170.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family SBP
Protein Properties Length: 888aa    MW: 97337 Da    PI: 7.168
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00522.1.g00170.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP681.9e-21178225148
                                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS
                             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 
                                     +Cqv++C+adl++ak+yhrrhkvCevhsk++++lv++++qrfCqqCs 
  Zmw_sc00522.1.g00170.1.sm.mkhc 178 MCQVDDCRADLTSAKDYHRRHKVCEVHSKTTKALVANQMQRFCQQCSS 225
                                     6*********************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.2E-23172225IPR004333Transcription factor, SBP-box
PROSITE profilePS5114117.683176253IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.19E-21177225IPR004333Transcription factor, SBP-box
PfamPF031103.6E-15179226IPR004333Transcription factor, SBP-box
Gene3DG3DSA:1.25.40.207.5E-4677780IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 888 aa     Download sequence    Send to blast
MQREVGPQVA PPLFLHQIQQ LPPHAAAAKK RGHPWPAGPP ANKPAVVADA GAGAGNWNPR  60
MWDWDSRSLT ARPSSDALRL GSGAGQSQPQ PAARAAEASR QGSGSLNLQL GLRKDGATAM  120
DATGSAPMAA ASSPPPSAAA GQEPVVRPSK RVRSGSPGSV AGGSVGGGAA NGGGSYPMCQ  180
VDDCRADLTS AKDYHRRHKV CEVHSKTTKA LVANQMQRFC QQCSSVDDDI RPRTDSANKY  240
LSSESSNPLD ERSPSSSPPI THKFFPIHSV DEEVRHPQAA DYGEDPAMIE VSTSRAWCAP  300
PLELFKDSER PIENGSPPNP GYRSCYASTS CSDHSPSSSN SDGQDRTGRI IFKLFGKEPS  360
TIPGNLRSEI INWLKHSPTE MEGYIRPGCL VLSMYLSMPP IAWDELEENL LQRVNALIEG  420
SGVDFWRNGR FLVRTDTQLV SYKDGMTRLS KSWRTWNTPE LTFVTPIAVV GGKKTSLVLK  480
GRNLTIPGTQ IHCTNMGKYI SKQVLCSAYP GTIYDDSGVE TFDLPGEPNL TLGRCFIEVE  540
NRFRGNSFPV IVANSSVCKE LRNLEIELED SQFHDVSLDD QVHDHRQSKP RDQALHFLNE  600
LGWLFQRAAA CTPSTRSDVC DSDLIQFSTI RFKHLLLFSS ERDWCSVTRT LLDILAKRSF  660
VSEEVSQETL EMLSEIHLLN RAVKRKSSCM VHLLVQHVVM CPDNSKLYPF VPNLPGPGGL  720
TPLHLAASIE NAEDIVDALT DDPQQIGLSC WQSVLDDDGQ SPETYAKLRN HNSYNELVAQ  780
KLLDRKNNQV TIMVSKDDIL VEQLGNDGGY NKSGAQALQI RSCSQCAILD SGVLRPPLRS  840
RGLLARPYIH SMLAIAAVCV CVCVFMRALL RFNSGRSFKW ERLDFGTI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj0_A3e-20174224151squamosa promoter-binding protein-like 12
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021320166.10.0squamosa promoter-binding-like protein 15
SwissprotA2YX040.0SPL15_ORYSI; Squamosa promoter-binding-like protein 15
SwissprotQ6Z8M80.0SPL15_ORYSJ; Squamosa promoter-binding-like protein 15
TrEMBLA0A1B6PIZ00.0A0A1B6PIZ0_SORBI; Uncharacterized protein
STRINGPavir.Fb01917.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54563853