PlantTFDB
Plant Transcription Factor Database
PlantRegMap/PlantTFDB v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00521.1.g00070.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 177aa    MW: 20307.6 Da    PI: 9.6688
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00521.1.g00070.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.75.6e-15381141390
                                   TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
                            B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                                   +++  l  ++a++ g++ +++ ++++ +   + W+ ++ +  +sgr +l++GW +Fv++ngL++gD+++F+l+++ +++
  Zmw_sc00521.1.g00070.1.sm.mk  38 NHLKELGSRYARTVGLPARRG-QVVVLQYMRKIWKTEM-MIHHSGRQFLGGGWLRFVHDNGLRVGDICLFELKNErKNG 114
                                   555667788999999997776.88888999********.677888889***********************99765665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.71E-1422110IPR015300DNA-binding pseudobarrel domain
CDDcd100177.89E-1423110No hitNo description
SMARTSM010196.6E-531128IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.6E-1433111IPR015300DNA-binding pseudobarrel domain
PfamPF023621.8E-1238113IPR003340B3 DNA binding domain
PROSITE profilePS5086310.19359124IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MKSCKCCERD LNHLDAKNQN MTCFLRLMTG NIKCNTENHL KELGSRYART VGLPARRGQV  60
VVLQYMRKIW KTEMMIHHSG RQFLGGGWLR FVHDNGLRVG DICLFELKNE RKNGPPRPSP  120
LSELRNHSHQ DGPLPCVRYA DVIMTNIVAR LAVSDALDKH WVLPTSVSLE KCRPMDQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022685567.14e-19B3 domain-containing protein Os03g0619600-like
RefseqXP_025797617.12e-18B3 domain-containing protein Os03g0619800-like isoform X1
RefseqXP_025797619.12e-18B3 domain-containing protein Os03g0619800-like isoform X2
RefseqXP_025797620.12e-18B3 domain-containing protein Os03g0619800-like isoform X3
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172