PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00490.1.g00180.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LBD
Protein Properties Length: 348aa    MW: 36665.2 Da    PI: 7.3287
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00490.1.g00180.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260114.28.3e-3640138198
                        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 
                                   +C aCk+lrrkC ++C++ap+f +eq   kf++vh +FGas++ kll+++p+++r+da+ s++yeA+ar+ dPvyG+ + i
  Zmw_sc00490.1.g00180.1.am.mk  40 PCGACKFLRRKCINGCIFAPHFDSEQgVTKFEMVHTVFGASKIAKLLDEIPQHKRPDAIFSICYEAQARICDPVYGCSNQI 120
                                   7***********************9977***************************************************** PP

                        DUF260  81 lklqqqleqlkaelallk 98 
                                   l+lq+q+ +l+ael  ++
  Zmw_sc00490.1.g00180.1.am.mk 121 LALQEQVWNLQAELTNMQ 138
                                   *************98765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.65939141IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-3540137IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MGSMAHGVGG PSLSSGIGGG GGGGDGGSGN EGGGGGRSEP CGACKFLRRK CINGCIFAPH  60
FDSEQGVTKF EMVHTVFGAS KIAKLLDEIP QHKRPDAIFS ICYEAQARIC DPVYGCSNQI  120
LALQEQVWNL QAELTNMQIR LAEMELARQS TFVGEPHISI ASTFPVYNLP ASSNILATIN  180
PSSLSDLQTQ SQLASQQQVQ HQQLHQQQFV QEGGSVMGNS NDLLALESEL MYGVTGVAPP  240
LQDTYQRFLS SHPSLAPPST SICHAFRVAQ SSVGSCVGAG SRCDDVGRGR RRRRAGSPMM  300
GVEHHVAAAV VGLDGARHAV LANVESGIRS TERRGLGPKS THSTTPSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-34361417111LOB family transfactor Ramosa2.1
5ly0_B6e-34361417111LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019705568.11e-54LOB domain-containing protein 18-like
STRINGXP_008776002.14e-53(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3615133