PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00487.1.g00310.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 645aa    MW: 68189.3 Da    PI: 7.6136
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00487.1.g00310.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.37.8e-15402476455
                                   HHHHHHHHHHHHHHHHHHHHHCTSCCC..........................TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPkas.......................kapskKlsKaeiLekAveYIksLq 55 
                                    hn  ErrRRdriN+++  L+el+P++                        +++    +Ka++Le+A+eY+k Lq
  Zmw_sc00487.1.g00310.1.am.mk 402 VHNLSERRRRDRINEKMRALQELIPNCNkvnspidrrgrshdvrtfvltqlRNSILQIDKASMLEEAIEYLKTLQ 476
                                   5*************************888********************766666669****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.32E-14395480No hitNo description
SuperFamilySSF474596.67E-16396486IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.037398475IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-12402476IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-17402484IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-15404481IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MGLPHLSAAS LGWVGGASLL TTRLARCLSS SPSSISTHAT PLCQLLLPLQ CYPGAPRHCR  60
SPTCRRASHP RAGAPSPRSN RPGDELAELL WDSNCPALRT TPHFPAAAPF QPFTCGAAGS  120
SRANELLNKR HAVGAMDDDV AGLGGIPAVH HDHDHDAVPW LHCPVIDDGD SDTAPLPPEY  180
CAGLLSPGYT GLHALPDPTP TVSDIARSSS TGGAVVVPAT RAVTPEAATA QPQPSAAGEG  240
VMNFTFFSRP LQRLQPSAAA AAPPPSNLLE FTTAAQTAAS RLRNTPLFSE QRMAWLQPPK  300
GPPRATAGAP PATDRHHHAE AAATVTQNRM QQPPDARPPD ATAGVTTSSV CSGNGDRSHD  360
KRSSHHPTAE CSVSPDEDMD DEPGAVRRPT ERGTKRSRTA EVHNLSERRR RDRINEKMRA  420
LQELIPNCNK VNSPIDRRGR SHDVRTFVLT QLRNSILQID KASMLEEAIE YLKTLQLQVQ  480
LMSMGTGLCV PAAPMLMQMQ MPLVAPPFPH LGMGLGFGAV GFDILPRFAA AQFPCPVMPP  540
GAVFGMPGQV VPSPLAPFAH VNGAATVEHR EAAAAAAPAP PGGGAAAGDR QPSVPVPLQV  600
LYARPLIKIA IFFSGRPEAA APEADVTTDD AAYPRAVADR MHPWS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1406411ERRRRD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008662938.11e-133transcription factor APG isoform X2
TrEMBLA0A0A9P9871e-154A0A0A9P987_ARUDO; Uncharacterized protein
STRINGGRMZM2G062541_P011e-132(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35273775