PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00471.1.g00160.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 320aa    MW: 36057.3 Da    PI: 7.889
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00471.1.g00160.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.75.7e-33501961128
                             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatg 71 
                                     +p+G++F+P+d+el+ ++L+  v++        ++++   i+   +i++++P++Lp  v+++  + +fF++ +k+y++g
  Zmw_sc00471.1.g00160.1.sm.mkhc  50 MPAGVKFDPSDQELI-HHLRTMVDDGGsrahplIDEFIPtIQGDdGICYTHPENLP-GVRKDGLSKHFFHRPSKAYTNG 126
                                     699************.99*****99986665443332333665546**********.666677799************* PP

                             NAM  72 krknra............tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                     +rk+r+            +++ +W++tgk++++++ +g++ g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Zmw_sc00471.1.g00160.1.sm.mkhc 127 TRKRRKiharrdlnssdnAAEMRWHKTGKTRPLIV-EGRQEGCKKILVLYanFGKRRKPEKTNWVMHQYHL 196
                                     *****879999999988877899************.9999**********6547999999*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.15E-3543214IPR003441NAC domain
PROSITE profilePS5100530.99350214IPR003441NAC domain
PfamPF023651.4E-1451196IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MNRELPIPTI SSSCGLEITA GKFEHRRVST LRSCPSCGHA IDCNTDMVGM PAGVKFDPSD  60
QELIHHLRTM VDDGGSRAHP LIDEFIPTIQ GDDGICYTHP ENLPGVRKDG LSKHFFHRPS  120
KAYTNGTRKR RKIHARRDLN SSDNAAEMRW HKTGKTRPLI VEGRQEGCKK ILVLYANFGK  180
RRKPEKTNWV MHQYHLGDQE EKDGELVVSK VFYQTQTRQH VATAAPAMVA TAEQDSMKGE  240
EAAETSEETQ DELSGCAAAS TTSMVVMMQQ RQQRRTNRDD GQLRVADSRK RDHEVGLGDQ  300
ETSHKQEQND NRNIASQQQL
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960907.11e-123NAC domain-containing protein 73
RefseqXP_025808650.11e-123NAC domain-containing protein 10-like isoform X2
SwissprotQ9M0F82e-97NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A1E5W3H81e-129A0A1E5W3H8_9POAL; NAC domain-containing protein 73
STRINGSi024889m1e-124(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145338117
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]