PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00469.1.g00260.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 348aa    MW: 37878 Da    PI: 10.5174
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00469.1.g00260.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.69.7e-21196245255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                                   +y+GVr+++ +grW+AeIrdp     +  +r++lg+f+taeeAa+a++aa ++l+g
  Zmw_sc00469.1.g00260.1.am.mk 196 RYTGVRRRP-WGRWAAEIRDP-----QlrRRVWLGTFDTAEEAAAAYDAACRRLRG 245
                                   69*******.**********9.....445*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.589196253IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-27196252IPR001471AP2/ERF domain
SMARTSM003806.8E-29196259IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-19196253IPR016177DNA-binding domain
CDDcd000181.44E-15196251No hitNo description
PfamPF008474.7E-14196245IPR001471AP2/ERF domain
PRINTSPR003672.9E-10197208IPR001471AP2/ERF domain
PRINTSPR003672.9E-10219235IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MPDKGTRVIS FRALSTPHVP WLPRANMPHT ATAPPRGRPR PIGGDSLQGT PTNNYGTTLP  60
LAPLFNLSFL CFLPTTDTVP RPQFPLRLPA RLPNSPRVRC GASMAAAGEA AVGIEEDKLA  120
VEVEEPAAPR CRLVRIIVHD EDATDSSSDE DDDEGQEERK RRVQPPAGVK RKRVMLRAAG  180
GEGEERKKAA AEEEVRYTGV RRRPWGRWAA EIRDPQLRRR VWLGTFDTAE EAAAAYDAAC  240
RRLRGSGAAT NLSSGDTTPA HRPPAALLPP RPPLPPIRRP PQQEKKPPPP SQDSSPETEK  300
QTAASSSPEP FVPLPVWALL SGKRKKRSGC GGRVPALRTP PAEEASRA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-161932521171Ethylene-responsive transcription factor ERF096
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158172RKRRVQPPAGVKRKR
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2769534