PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00462.1.g00200.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LBD
Protein Properties Length: 422aa    MW: 44826.7 Da    PI: 8.0396
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00462.1.g00200.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260108.84.2e-3438137199
                        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 
                                   +C aCk+lrrkC ++C++ap+f +eq   kf+++h +FGas++ kll+++p+++r+da+ s++yeA+ar+ dPvyG+ + i
  Zmw_sc00462.1.g00200.1.am.mk  38 PCGACKFLRRKCINGCIFAPHFDSEQgVTKFEMLHTVFGASKIAKLLDEIPQHKRPDAVFSICYEAQARICDPVYGCSNQI 118
                                   7***********************9977***************************************************** PP

                        DUF260  81 lklqqqleqlkaelallke 99 
                                   l+lq+q e ++ ++ l++ 
  Zmw_sc00462.1.g00200.1.am.mk 119 LALQEQAELTNMQIRLAEM 137
                                   ********99999988776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.65837139IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-3338135IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MAHGVGTPSL SGGIGGGGGG GDGGSGNEGG EGGGRSGPCG ACKFLRRKCI NGCIFAPHFD  60
SEQGVTKFEM LHTVFGASKI AKLLDEIPQH KRPDAVFSIC YEAQARICDP VYGCSNQILA  120
LQEQAELTNM QIRLAEMELA RQSTFVGEPH VSIASTYPVY NLPASSNILA TINPSSLSDL  180
QTQSQLASQQ QVQHQQLHQQ QFVQESGSVV GNSNDLLALE SELMYGVTGV APPLQDIYHL  240
LPAPLTCCRS QPALTSHANG GVWDQMEEGP ARLMYCSISF RNSSSTSDSR QQEGGGPEPR  300
LVSSTLRPCL THLPVRHPSC PSAAGPAPFW IYLSAALKLA VAGAVAARCR PASHQPLQPA  360
TGPLALPNFA AAPASLSTTT ARCLPCSPAT ACRRLRRPAA AHHRPFRTYL FSGETRRQTR  420
PH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-31341437115LOB family transfactor Ramosa2.1
5ly0_B2e-31341437115LOB family transfactor Ramosa2.1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7027222