PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00407.1.g00050.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 299aa    MW: 32483.1 Da    PI: 4.9087
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00407.1.g00050.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.2e-19107156255
                             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                     +y+GVr+++ +g+W+AeIrdp+    r  r++lg+f ta+ Aa+a++aa+++l+g
  Zmw_sc00407.1.g00050.1.sm.mkhc 107 RYRGVRQRP-WGKWAAEIRDPV----RgVRVWLGTFSTADSAARAYDAAARRLRG 156
                                     7********.**********63....56*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.59E-17107163No hitNo description
Gene3DG3DSA:3.30.730.103.7E-32107166IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-22107165IPR016177DNA-binding domain
SMARTSM003801.1E-37107170IPR001471AP2/ERF domain
PfamPF008475.9E-13107156IPR001471AP2/ERF domain
PROSITE profilePS5103224.684107164IPR001471AP2/ERF domain
PRINTSPR003674.1E-11108119IPR001471AP2/ERF domain
PRINTSPR003674.1E-11130146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MCGGAIIADL IPERSRCSRQ PSHPALPSKK RSWRDHDADT VDIDDFEAAF EDFEGDSDEE  60
AVVHVDDDEE SELTLLAPLG RKPLSPLFPR GARRAKDAIA MRPGARRYRG VRQRPWGKWA  120
AEIRDPVRGV RVWLGTFSTA DSAARAYDAA ARRLRGTKAK LNFPSSSSPP RRKRRRDNAG  180
TCTSSPSTKT DVPAFVPAVD YGATAAVFGE NLSSQKLADE GDPALLQPSL ACAAASWSAG  240
DSEVVDPPYD FSGEIMTSCF AFTGCEYESL ETLFSGETAV EEHGLMGPWS FGEGGSFIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-21106164463ATERF1
3gcc_A6e-21106164463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171175RKRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791795.16e-68ethylene-responsive transcription factor 1-like
TrEMBLA0A1E5W3L07e-80A0A1E5W3L0_9POAL; Uncharacterized protein
STRINGPavir.Ib02796.1.p3e-68(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151951415