PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00403.1.g00270.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bZIP
Protein Properties Length: 416aa    MW: 43699.5 Da    PI: 4.8084
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00403.1.g00270.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.92.2e-13225275555
                                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                                     + +rrkq+NRe+ArrsR RK a + eLe  v++L  eN++L  +l   +++
  Zmw_sc00403.1.g00270.1.sm.mkhc 225 RLQRRKQSNRESARRSRSRKAAHLNELEAQVAQLRVENSSLLRRLADVNQK 275
                                     679**************************************9888766655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.0E-15221285IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.22223277IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.6E-10224277No hitNo description
SuperFamilySSF579591.75E-9225274No hitNo description
PfamPF001701.2E-10225273IPR004827Basic-leucine zipper domain
PfamPF124984.9E-49292409IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MERVFSVEEI PNPYWAPQQP QAPATGAAVA PVGGGGGPGG QGGGAAVDGA GAMNRCPSEW  60
YFQKFLEEAV LDSPGPGTSA GRGLGGVDAV ETKPPVGTPG ATSSAAVDPM EYNAMLKQKL  120
EKDLAAVAMW RASSAMPPER SAAAPSLPNV EVSHVGSLNS IGGYGIPVQS KPADRPSGGL  180
GLQVVQNVDA IVKQATSSSS REPSDDDDME GEAETTGNEN PVQQRLQRRK QSNRESARRS  240
RSRKAAHLNE LEAQVAQLRV ENSSLLRRLA DVNQKFNDAA VDNRVLKADV ETLRAKVKMA  300
EDSVKRATGM NALFPAVSDM SSLSMPFQGS PSDSTSDAAI PLQDDPNSYF ATPSEVRANN  360
SYMPDIASST QEDEDFVNAA LAACKMDRTA SLQRVASLEH LQKRMCGGPA SSGSTS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the DNA specific sequence 5'-GCCACGT[AC]AG-3' found in the alpha-globulin gene promoter (PubMed:9049271, PubMed:11572990). Does not bind to promoters of other major storage genes such as glutelin, prolamin and albumin (PubMed:9049271). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:11572990, ECO:0000269|PubMed:9049271}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981429.10.0bZIP transcription factor RISBZ2 isoform X1
RefseqXP_022679227.10.0bZIP transcription factor RISBZ2 isoform X2
SwissprotQ7X9A80.0RSBZ2_ORYSJ; bZIP transcription factor RISBZ2
TrEMBLA0A1D8RJ530.0A0A1D8RJ53_ELECO; Opaque 2 protein
STRINGPavir.J01091.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34883878
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Yang D,Wu L,Hwang YS,Chen L,Huang N
    Expression of the REB transcriptional activator in rice grains improves the yield of recombinant proteins whose genes are controlled by a Reb-responsive promoter.
    Proc. Natl. Acad. Sci. U.S.A., 2001. 98(20): p. 11438-43
    [PMID:11572990]
  3. Cheng S,Wang Z,Hong M
    Rice bZIP protein, REB, interacts with GCN4 motif in promoter of Waxy gene.
    Sci. China, C, Life Sci., 2002. 45(4): p. 352-60
    [PMID:18759022]