PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00363.1.g00330.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 865aa    MW: 92416.9 Da    PI: 11.4547
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00363.1.g00330.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP107.62e-335897073125
                           TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssasec..eae 76 
                                   g+kdrhsk++T++g RdRRvRls+++a++f+dLqd+LGfd++sk+ieWL+++a  ai  l+ +            +  e++
  Zmw_sc00363.1.g00330.1.am.mk 589 GGKDRHSKVYTAKGIRDRRVRLSVPTAIQFYDLQDRLGFDQPSKAIEWLINAAAGAIERLPALdpaafA------AapEPG 663
                                   78*************************************************************444330......233233 PP

                           TCP  77 sssssasnsssgkaaksaakskksqksaasalnlak.esrakarararer 125
                                   +   + ++ s       +  s+ s++s+ s l+l++ +sr    + +r+r
  Zmw_sc00363.1.g00330.1.am.mk 664 EAATKRQQGSV------SGGSSTSETSKGSELSLSRsDSRGGGASASRDR 707
                                   33332221111......122233333333334444444443333333333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.0E-33590701IPR005333Transcription factor, TCP
PROSITE profilePS5136932.452590648IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 865 aa     Download sequence    Send to blast
MRRSARAPDP DKVESSRARS AQAAFVAFSH RVSVMRRVHD LDCMLRRCRR RGGAVGISSC  60
SRATGSCSSL VSRRRVRVKR HADSGTVAAE SGAVIEPVPS LPRENREKHV WNQHLSTCSI  120
HPSTSSRNVS PGATNGGRTS GGYRPAISAR VFTRPLTATA WSQDPLGRPP FLRQDAGRHA  180
AARLSTGHLP DATQIPRPIV LTAEERKRAI SLRCWRCTLH CCCCVLTCNM EMLVTRLQEG  240
GEAAAGGDCQ INGGDRRTAG SSEATCAFRF PAHISSMPPS LPASSSTARS EGWMSATPPS  300
NEPPVAAKVA IIEGHQGHAR FAMRPPAVKR PVEEQLKKKT VGAPAAAGSR YARHGSKRRT  360
PATSPSTVAI PTHPTDRLTD ECARAVQRRR RCRSQTALAV GPSEAFRRRC FPLLSAAFAS  420
PQRPAREQTQ SVSDSGWQCA PQETATKRWH EPFTAFEQQQ GRRGRRAPTR RQKQGHPPGV  480
AVATHISAAA AAAALLWHRI DRNRQAPPVH RSSSIKTPHF YERLRRAGME NGAAGDGASG  540
RPHGGAKRGR GGVMRGSETE TAWGQPPALP PPPQGAGTAS RICRVGRGGG KDRHSKVYTA  600
KGIRDRRVRL SVPTAIQFYD LQDRLGFDQP SKAIEWLINA AAGAIERLPA LDPAAFAAAP  660
EPGEAATKRQ QGSVSGGSST SETSKGSELS LSRSDSRGGG ASASRDRDVT VASTSTQAAS  720
FTELLTGAAE HRQAWQPQPN VSAAVAHTEK GANGLSTHVF SAPTVVKFGN APPFGMVPAQ  780
PLNFPTPDAL AASSAPAGDY NLNFSMSSGH HHQQLQRLEG QFLFGYAAAA AAAAHPSSEN  840
QLNASAAIQL WDGFRHPGMK EKSKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-23595649155Putative transcription factor PCF6
5zkt_B1e-23595649155Putative transcription factor PCF6
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30943271