PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00351.1.g00070.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 601aa    MW: 65113.8 Da    PI: 10.3561
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00351.1.g00070.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22e-18422471255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                    y+GVr+++ +g+WvAeIr p++   r+r +lg+f++a++Aa a+++a+ +l+g
  Zmw_sc00351.1.g00070.1.am.mk 422 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDSADDAALAYDKAAFRLRG 471
                                   59******9.**********955...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.56E-27421479No hitNo description
SMARTSM003803.0E-35422485IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-21422479IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.8E-31422480IPR001471AP2/ERF domain
PROSITE profilePS5103222.787422479IPR001471AP2/ERF domain
PfamPF008472.8E-12423471IPR001471AP2/ERF domain
PRINTSPR003671.5E-9423434IPR001471AP2/ERF domain
PRINTSPR003671.5E-9445461IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MDPSTGRQLT STHAGRATQH HPHDASRRLC QIREARREIE IEQHRRHASV VAARSTAPTP  60
RPRRPRSVSW QALLAAAAAK CRHGAGCFIS VAIPFAEMRK YQIAFDILQP AHATHGATVI  120
CRATTFHRAA GPLAGDSSRL FTARSFVHSA RKAATRSRDD LTSRAIKTPA REATSPQERR  180
LRPHHTTNTE LLLAPPHKPS PPHSQPNPVH FPGEAERSVS TSHHHGDDED RDRCRRQKLV  240
GREKGRGFIA APRLLRLPRA IDLHTNQLSS SSSSSSDQEL MKALEPFIRS ASPTSSTSTS  300
PFSNSYSYTT SALPQDSYCF PASSSYTALP LPPPPAPTAT SFSQLPPLPP SSSYASPASY  360
TAPADAATGL THLSQAQVQV QQIQAQLLLQ QQQRSLAASF LGPRAQPMKH AGVPPSAAAG  420
KLYRGVRQRH WGKWVAEIRL PRNRTRLWLG TFDSADDAAL AYDKAAFRLR GDAARLNFPS  480
LRRGGAHLAG PLDASVDAKL TAICLSLDAS TNKPRTTAAH PDSPKASAST TTSEGDESVH  540
SAGSPPPGSA PSQQQQQQQQ PAPPLPEMAC LDFTEAPWDE SATFHLNTFP SCDIDWDAIL  600
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-21418479163ATERF1
3gcc_A9e-21418479163ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008659105.11e-119ethylene-responsive transcription factor RAP2-13
TrEMBLA0A3L6PCC81e-119A0A3L6PCC8_PANMI; Ethylene-responsive transcription factor RAP2-13-like
STRINGPavir.Da01302.1.p1e-137(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203