PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00338.1.g00410.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 144aa    MW: 16499.4 Da    PI: 4.275
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00338.1.g00410.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM613.8e-19786189
                             NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81
                                    lppGf+F P+deelvv++L++k++  +++  ++i+ v +++++Pw+L+ k+ +  ++wyfFs++ +        +r+t +g
  Zmw_sc00338.1.g00410.1.sm.mkhc  7 LPPGFHFFPSDEELVVHFLHRKASLLPCQP-DIIPIVPLNQHDPWELNGKALEAGNQWYFFSNATR--------SRVTPNG 78
                                    79*************************999.99**************966667789******9866........6899999 PP

                             NAM 82 yWkatgkd 89
                                    yW+    d
  Zmw_sc00338.1.g00410.1.sm.mkhc 79 YWNPICAD 86
                                    99876655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.19E-25499IPR003441NAC domain
PROSITE profilePS5100519.4347144IPR003441NAC domain
PfamPF023655.3E-12882IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MVGPSDLPPG FHFFPSDEEL VVHFLHRKAS LLPCQPDIIP IVPLNQHDPW ELNGKALEAG  60
NQWYFFSNAT RSRVTPNGYW NPICADEMDC NNWVVCRVFD SSCGSKVSFH EEDTELSCLD  120
EVFLSLDDYD EVTDMTTTQH IKYK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-1578817106NO APICAL MERISTEM PROTEIN
1ut4_B1e-1578817106NO APICAL MERISTEM PROTEIN
1ut7_A1e-1578817106NO APICAL MERISTEM PROTEIN
1ut7_B1e-1578817106NO APICAL MERISTEM PROTEIN
3swm_A1e-1578820109NAC domain-containing protein 19
3swm_B1e-1578820109NAC domain-containing protein 19
3swm_C1e-1578820109NAC domain-containing protein 19
3swm_D1e-1578820109NAC domain-containing protein 19
3swp_A1e-1578820109NAC domain-containing protein 19
3swp_B1e-1578820109NAC domain-containing protein 19
3swp_C1e-1578820109NAC domain-containing protein 19
3swp_D1e-1578820109NAC domain-containing protein 19
4dul_A1e-1578817106NAC domain-containing protein 19
4dul_B1e-1578817106NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823282.15e-70NAC domain-containing protein 104-like isoform X2
SwissprotQ8GWK62e-35NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A0D9W5744e-70A0A0D9W574_9ORYZ; Uncharacterized protein
TrEMBLA0A2T7CV599e-70A0A2T7CV59_9POAL; Uncharacterized protein
STRINGSi011079m2e-62(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36673679
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]