PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00335.1.g00140.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 287aa    MW: 29909.6 Da    PI: 4.3047
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00335.1.g00140.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-183485156
                           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                                  ++y GVr+++ +gr++AeIrdp +   + r++lg+f+taeeAa a+++a+++l+g+
  Zmw_sc00335.1.g00140.1.am.mk 34 TRYLGVRRRP-WGRYAAEIRDPAT---KERHWLGTFDTAEEAAVAYDRAARSLRGA 85
                                  5799******.**********843...4*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.60E-283493No hitNo description
SuperFamilySSF541714.51E-213592IPR016177DNA-binding domain
SMARTSM003803.1E-323598IPR001471AP2/ERF domain
PfamPF008471.0E-103584IPR001471AP2/ERF domain
PROSITE profilePS5103221.5623592IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-283592IPR001471AP2/ERF domain
PRINTSPR003671.6E-83647IPR001471AP2/ERF domain
PRINTSPR003671.6E-85874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MNFSSYFFSS SSDKKPSSKR RQQQQPSAPD ANTTRYLGVR RRPWGRYAAE IRDPATKERH  60
WLGTFDTAEE AAVAYDRAAR SLRGARARTN FAYPDLPPGS SITPYLSPDL TSGDVNSAQL  120
LQPFYADPAA AAAALPNPAA NGALLQPFYA DPAAAAAALP NPAANGAVKD DYEYGYGAYG  180
DADMASLMDD IAFPDDLSAM GGDSGSSMMD MSSAYGSGGG ASAGAGGGWC DASELGGYGA  240
STTTASGAHG VYFEEGYVHS PLFSPMPAVD DACADGFQLG GSSSYYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-183191162ATERF1
3gcc_A8e-183191162ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975472.11e-109ethylene-responsive transcription factor LEP
TrEMBLK3YEC41e-107K3YEC4_SETIT; Uncharacterized protein
STRINGPavir.Gb01913.1.p1e-115(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397