PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00331.1.g00320.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LBD
Protein Properties Length: 357aa    MW: 38161.2 Da    PI: 9.7871
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00331.1.g00320.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260120.97e-3872168196
                        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 
                                   +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i
  Zmw_sc00331.1.g00320.1.am.mk  72 PCGACKFLRRKCVSGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLQIPAHKRLDAVVTICYEAQARLRDPVYGCVAHI 152
                                   7***********************9989***************************************************** PP

                        DUF260  81 lklqqqleqlkaelal 96 
                                   ++lqqq + +++e+a+
  Zmw_sc00331.1.g00320.1.am.mk 153 FALQQQQRAVRKEAAK 168
                                   *********9999875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.84771173IPR004883Lateral organ boundaries, LOB
PfamPF031952.8E-3772167IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MPSIRFYTTI PPCLPLILSP PERRVLPRCL HPPPDLRLRA MSSGGCTSTP PGCGGGGCPS  60
GSGGPGGGGG GPCGACKFLR RKCVSGCIFA PYFDSEQGAA HFAAVHKVFG ASNVSKLLLQ  120
IPAHKRLDAV VTICYEAQAR LRDPVYGCVA HIFALQQQQR AVRKEAAKPG TLLRAGTRRI  180
LRRRIVIPAV RCLPPPVAYY YAVVHLGLRI VLGWWCQRQS LVVNLQAELT YLQAHLATLE  240
LPSPPPLPAP PQMPVPAPFN IADLPSATNV PTTVDLSALF DTPPQAHQWA SVQQQHHHQL  300
RQPTMTSYGA SVRGGHGMAE SSSAGGGGDL QALARELLDR HRSGVKLESP PPPPPHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-34681657103LOB family transfactor Ramosa2.1
5ly0_B3e-34681657103LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160420.12e-71LOB domain-containing protein 30
TrEMBLA0A0E0GJP43e-87A0A0E0GJP4_ORYNI; Uncharacterized protein
STRINGONIVA03G11070.15e-88(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4217433