PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00309.1.g00050.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 345aa    MW: 38307.6 Da    PI: 7.128
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00309.1.g00050.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.31.8e-50101541128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk................kvka.eekewyfFskr 64 
                                   +ppGfrFhPtdeel+ +yL+kkv+ ++++l +vi+e+d++k+ePwdL+                 ++ +  ++ewyfFs++
  Zmw_sc00309.1.g00050.1.am.mk  10 VPPGFRFHPTDEELLYYYLRKKVSFEPIDL-DVIREIDLNKLEPWDLKGagansqdlfmahadrcRIGTgPQEEWYFFSHK 89 
                                   69****************************.9***************94588999999888887644443556******** PP

                           NAM  65 dkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   dkky+tg+r+nrat++g+Wkatg+dk+++    g+ +gl+ktLvfy+grap+g+kt+W+mheyrl
  Zmw_sc00309.1.g00050.1.am.mk  90 DKKYPTGTRTNRATAAGFWKATGRDKAIFLGnAGRRIGLRKTLVFYTGRAPHGKKTEWIMHEYRL 154
                                   *****************************9767888***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.18E-547174IPR003441NAC domain
PROSITE profilePS5100556.68610174IPR003441NAC domain
PfamPF023653.4E-2711154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MQPSSSPLSV PPGFRFHPTD EELLYYYLRK KVSFEPIDLD VIREIDLNKL EPWDLKGAGA  60
NSQDLFMAHA DRCRIGTGPQ EEWYFFSHKD KKYPTGTRTN RATAAGFWKA TGRDKAIFLG  120
NAGRRIGLRK TLVFYTGRAP HGKKTEWIMH EYRLDEDNVE VPEDGWVVCR VFKKKSIQRS  180
FEQPGMAPGD EEELQTLTPV DQKQGRLRNQ LMHGGFPAFD PFMHLPPLAS PDATPGSSTS  240
AFMSGTLALA MNPLEMGSSS QYMAKLTTVL AGANAGEVLL SGGDRIGAVA DWSILDNLLA  300
SRQNLDQLFH GKLGGAAVEA PHHYQQQLPL LMETGASSLP RLPLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-48817615167NO APICAL MERISTEM PROTEIN
1ut4_B5e-48817615167NO APICAL MERISTEM PROTEIN
1ut7_A5e-48817615167NO APICAL MERISTEM PROTEIN
1ut7_B5e-48817615167NO APICAL MERISTEM PROTEIN
3swm_A6e-48817618170NAC domain-containing protein 19
3swm_B6e-48817618170NAC domain-containing protein 19
3swm_C6e-48817618170NAC domain-containing protein 19
3swm_D6e-48817618170NAC domain-containing protein 19
3swp_A6e-48817618170NAC domain-containing protein 19
3swp_B6e-48817618170NAC domain-containing protein 19
3swp_C6e-48817618170NAC domain-containing protein 19
3swp_D6e-48817618170NAC domain-containing protein 19
4dul_A5e-48817615167NAC domain-containing protein 19
4dul_B5e-48817615167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827212.11e-167NAC domain-containing protein 76-like
SwissprotQ5Z6B61e-103NAC76_ORYSJ; NAC domain-containing protein 76
TrEMBLA0A1E5VY611e-167A0A1E5VY61_9POAL; NAC domain-containing protein 76 (Fragment)
STRINGPavir.Ab01037.1.p1e-162(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34613781
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]