PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00212.1.g00300.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 300aa    MW: 33993.4 Da    PI: 7.8735
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00212.1.g00300.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1614.6e-50141461128
                             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee..vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatg 71 
                                     lppGfrFhP+d+elv +yL+kk+++        +      ++ +vd++k+ePwdLp  +    kewyf+s rd+kyatg
  Zmw_sc00212.1.g00300.1.sm.mkhc  14 LPPGFRFHPRDDELVLDYLAKKLHSGGggsmvsI--YGcpMMVDVDLNKCEPWDLPDIACIVGKEWYFYSLRDRKYATG 90 
                                     79*********************99887766432..2243699*************64445679*************** PP

                             NAM  72 krknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                     +r+nrat+sgyWkatgkd+ + + +g lvg++ktLvfykgrapkg+kt+Wvmhe+r 
  Zmw_sc00212.1.g00300.1.sm.mkhc  91 QRTNRATESGYWKATGKDRLISR-NGLLVGMRKTLVFYKGRAPKGKKTEWVMHEFRT 146
                                     *********************99.999****************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-594169IPR003441NAC domain
PROSITE profilePS5100554.57914169IPR003441NAC domain
PfamPF023652.8E-2515145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MAVMNSLSMV EATLPPGFRF HPRDDELVLD YLAKKLHSGG GGSMVSIYGC PMMVDVDLNK  60
CEPWDLPDIA CIVGKEWYFY SLRDRKYATG QRTNRATESG YWKATGKDRL ISRNGLLVGM  120
RKTLVFYKGR APKGKKTEWV MHEFRTEGQG DPTKLPFKED WVLCRVFYKS RATIAKPHTE  180
NSSYNNVDTA TTSPPPLVDN YNISFDQPGS VQNIEGYEQV PCFSSNPSQP SSSMNVPRSS  240
SMAADQKQHM EKSITDMLMS QFSRFEGNVI KREAPQSNFL QDGFEYLAES GFTQMWNSFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-4811694165NO APICAL MERISTEM PROTEIN
1ut4_B3e-4811694165NO APICAL MERISTEM PROTEIN
1ut7_A3e-4811694165NO APICAL MERISTEM PROTEIN
1ut7_B3e-4811694165NO APICAL MERISTEM PROTEIN
3swm_A4e-4811697168NAC domain-containing protein 19
3swm_B4e-4811697168NAC domain-containing protein 19
3swm_C4e-4811697168NAC domain-containing protein 19
3swm_D4e-4811697168NAC domain-containing protein 19
3swp_A4e-4811697168NAC domain-containing protein 19
3swp_B4e-4811697168NAC domain-containing protein 19
3swp_C4e-4811697168NAC domain-containing protein 19
3swp_D4e-4811697168NAC domain-containing protein 19
4dul_A3e-4811694165NAC domain-containing protein 19
4dul_B3e-4811694165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681432.10.0NAC domain-containing protein 21/22
SwissprotQ84TE68e-84NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLK3XYG70.0K3XYG7_SETIT; Uncharacterized protein
STRINGSi006975m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]