PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00195.1.g00060.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 380aa    MW: 41106.6 Da    PI: 6.7236
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00195.1.g00060.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.93e-51121521129
                             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek.ewyfFskrdkkyatgkrknrat 78 
                                     lppGfrFhPtdee+v+ yL +k  + +    ++i+ v+++++ePwdLp+k+k +ek +wyfF+++d ky+tg+r+nrat
  Zmw_sc00195.1.g00060.1.sm.mkhc  12 LPPGFRFHPTDEEVVTSYLVPKSLNATSFNPRAIAVVNLNSCEPWDLPSKAKMGEKdQWYFFCQKDMKYPTGTRTNRAT 90 
                                     79********************99988666689***************766666555********************** PP

                             NAM  79 ksgyWkatgkdkevlsk...........kgelvglkktLvfykgrapkgektdWvmheyrle 129
                                     ++gyWkatgkd+e+++            +++l+g+kktLvfy+grap+g+kt+Wvmhe+rle
  Zmw_sc00195.1.g00060.1.sm.mkhc  91 EKGYWKATGKDREIFKPgaspgdgggrrDDQLIGMKKTLVFYTGRAPRGTKTNWVMHEFRLE 152
                                     ****************9888888877766667***************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-579177IPR003441NAC domain
PROSITE profilePS5100555.69612177IPR003441NAC domain
PfamPF023652.1E-2713151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MVDQEEQGDL PLPPGFRFHP TDEEVVTSYL VPKSLNATSF NPRAIAVVNL NSCEPWDLPS  60
KAKMGEKDQW YFFCQKDMKY PTGTRTNRAT EKGYWKATGK DREIFKPGAS PGDGGGRRDD  120
QLIGMKKTLV FYTGRAPRGT KTNWVMHEFR LEGAYRNHPN LRLSPKDEWV VCKVFHKSNG  180
EEDKKAAAAA VEDFAAGTPT VSSISVDATG AVDGGDEFLD SMFFDPYFDY STGTFPADNH  240
AATMMNDVGG FFGPPYDAFD DDRTSRNPLH QAAAVSSATV PLVPPSSSGS YRSSWNTVPS  300
HYATGSSSYN LHDQAMMERA LGGAGFPNFA GGGGFPSYSV PGISQQNSLR RRGYATGRLA  360
SSAAAAAANI TGQAAKNLGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-46918214170NO APICAL MERISTEM PROTEIN
1ut4_B3e-46918214170NO APICAL MERISTEM PROTEIN
1ut7_A3e-46918214170NO APICAL MERISTEM PROTEIN
1ut7_B3e-46918214170NO APICAL MERISTEM PROTEIN
4dul_A3e-46918214170NAC domain-containing protein 19
4dul_B3e-46918214170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response (By similarity). Binds to DNA-specific sequences of CLPD1 and OAT promoters in vitro (PubMed:18813954). {ECO:0000250|UniProtKB:Q7F2L3, ECO:0000269|PubMed:18813954}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977422.11e-116NAC domain-containing protein 77
SwissprotQ5CD171e-94NAC77_ORYSJ; NAC domain-containing protein 77
TrEMBLK3Y8761e-114K3Y876_SETIT; Uncharacterized protein
STRINGSi010417m1e-115(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51203063