PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00175.1.g00060.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 609aa    MW: 66642.3 Da    PI: 8.8739
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00175.1.g00060.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.89.7e-14358403555
                                   HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   h + Er+RR+++N++f+ L+++lP+       K +K +iL +A eYI+sL+
  Zmw_sc00175.1.g00060.1.am.mk 358 HMISERKRREKLNDSFQALKTVLPPG-----SKKDKTSILIRAREYIRSLE 403
                                   8899********************95.....4999**************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.945353402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.48E-13355403No hitNo description
SuperFamilySSF474599.81E-16356420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.7E-17357420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-11358403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-12359408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MGARNPLGSD GKMLLLDGDV RPPVHLGIRY ECALEGSGNF LRLEQGTATG LVVATPIFCP  60
PRISIDASSG VNRPDTGRRV ALVGWLQRGI DPRHVGDMNW WCPVRWIRVF LSLQQRWIDR  120
SIAMDSSWFH GYATANAAGN NGFMCGYAAS CTPAELQHEE EEEMLISSQI QHHLNQISRH  180
MNMDDEVVYD GVLDIQEHPT MVDDLLDPNH ATSFPSSSSS SSLSLRSGSF SCSPDSSAQV  240
FGAPAPAASG HYPEVSSHVP LPPAAPYTNV HVSTAPLAAT PPAAGKQASA FKSYAQHLGP  300
RRQPTKPGAC GQKMFKTAMS VLSRMHMAAS ARYNQQYYYQ QASAEAVATP PSVNQLQHMI  360
SERKRREKLN DSFQALKTVL PPGSKKDKTS ILIRAREYIR SLESKASELE EKNKELESRL  420
TGHRGSQAGA DDADADKKVQ IEITRAAKEC WAVEPRDLCT LKIVVRSRCN MTDVVLRTLQ  480
CLKDQAGDDV NLVSMNTSGS SAGPPQTSSS PRAVLTMQIK SSRGAKWEEQ PVKDAVAKVV  540
ADAALTPPSA AVDETAPRRR QQLLADKDRR PARPCLTPDD TATSHSAGVV RRGRRRWGRV  600
RFHKRDVDG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1361366ERKRRE
2362367RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817328.11e-136putative transcription factor bHLH041
TrEMBLA0A2T7DSE31e-135A0A2T7DSE3_9POAL; Uncharacterized protein
STRINGSi001328m1e-134(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182