PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00117.1.g00860.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 364aa    MW: 40472.3 Da    PI: 8.978
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00117.1.g00860.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM88.11.6e-271352731128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkk...lelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyat 70 
                                   lp+G++F+Ptd+ l+ e+L+ k++ ++   +   +       +i+   +i++++P++Lp  v+++    +fF++ +k+y+t
  Zmw_sc00117.1.g00860.1.am.mk 135 LPAGVKFDPTDQVLL-EHLEGKARPESrklH---SlvdefipTIEGEdGICYTHPKRLP-GVSKDGLVRHFFHRPSKAYTT 210
                                   799*********999.99****999995551...333444434666646**********.555666688************ PP

                           NAM  71 gkrknratk.......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                   g+rk+r+++       + +W++t   ++vl+ +g++ g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Zmw_sc00117.1.g00860.1.am.mk 211 GTRKRRKVHrddkdggETRWHKT---RPVLA-NGSVRGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 273
                                   ******74445554446679966...88999.999***********6657999999*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-31128292IPR003441NAC domain
PROSITE profilePS5100526.906135292IPR003441NAC domain
PfamPF023652.5E-12136273IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MAERLVGYAR ICASGHVFVI PRMWRYLQMA STMSREDLFE AYTFVFVPAG DGELFLRRDR  60
MTWCNGFTDV RAAAETPASV VAATAGKMAA ASLAVLVEMC PSCGHRARTA AHMHESPTLP  120
PDDMLREMTT TIQDLPAGVK FDPTDQVLLE HLEGKARPES RKLHSLVDEF IPTIEGEDGI  180
CYTHPKRLPG VSKDGLVRHF FHRPSKAYTT GTRKRRKVHR DDKDGGETRW HKTRPVLANG  240
SVRGYKKILV LYTNYGKQRK PEKTNWVMHQ YHLGLEEEER DGELVVSKVF FQTQPRQCGS  300
ATAAAKDPAG AANNNPVISG GALAGHTVLR EANVLEYCYN PAMIGGLEQK GNKHTLSLEI  360
KLAA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001308424.11e-127uncharacterized protein LOC100275733 isoform 1
SwissprotO494591e-106NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A1E5VZX81e-131A0A1E5VZX8_9POAL; NAC domain-containing protein 73
STRINGGRMZM2G031200_P011e-126(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30753786
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]