PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00112.1.g00320.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 270aa    MW: 30353.4 Da    PI: 6.626
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00112.1.g00320.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.13.6e-49211511129
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 
                                   lppGf+FhP+dee++++yL +kv +++++   +i e++i+++ePw+Lp+++k +ekew+f+s +d+ky++++r nratk+g
  Zmw_sc00112.1.g00320.1.sm.mk  21 LPPGFQFHPHDEEIITFYLIPKVLNSNFTS-VAIGEANINNFEPWELPTTAKMGEKEWFFYSLKDHKYQNEERINRATKAG 100
                                   79*************************988.67***************989999*************************** PP

                           NAM  82 yWkatgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrle 129
                                   +Wkatgkdke++++     + vg+kktLvfy+grapkgekt W+mheyrle
  Zmw_sc00112.1.g00320.1.sm.mk 101 FWKATGKDKEIYQAsvmFPTIVGMKKTLVFYTGRAPKGEKTGWIMHEYRLE 151
                                   *************64443445****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-5518179IPR003441NAC domain
PROSITE profilePS5100552.83321179IPR003441NAC domain
PfamPF023651.2E-2422150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MKDHQEQEGI RGGVDDGCLN LPPGFQFHPH DEEIITFYLI PKVLNSNFTS VAIGEANINN  60
FEPWELPTTA KMGEKEWFFY SLKDHKYQNE ERINRATKAG FWKATGKDKE IYQASVMFPT  120
IVGMKKTLVF YTGRAPKGEK TGWIMHEYRL EGSGKLCCPT SSSNSTISKE WVICKVFKKT  180
SRNKKVHVLP TEEARANNDT DQSTMSFPTS MQFSMGAEDD FSVELGVLCP NMDPTMPFYS  240
TNDASTSVAP RMPPMTSMGT MGIDGSRNHA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-481918515171NO APICAL MERISTEM PROTEIN
1ut4_B8e-481918515171NO APICAL MERISTEM PROTEIN
1ut7_A8e-481918515171NO APICAL MERISTEM PROTEIN
1ut7_B8e-481918515171NO APICAL MERISTEM PROTEIN
3swm_A8e-481918518174NAC domain-containing protein 19
3swm_B8e-481918518174NAC domain-containing protein 19
3swm_C8e-481918518174NAC domain-containing protein 19
3swm_D8e-481918518174NAC domain-containing protein 19
3swp_A8e-481918518174NAC domain-containing protein 19
3swp_B8e-481918518174NAC domain-containing protein 19
3swp_C8e-481918518174NAC domain-containing protein 19
3swp_D8e-481918518174NAC domain-containing protein 19
4dul_A8e-481918515171NAC domain-containing protein 19
4dul_B8e-481918515171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
UniProtTranscription activator that binds to DNA in promoters of target genes on a specific bipartite motif 5'-[ACG][CA]GT[AG](5-6n)[CT]AC[AG]-3' (PubMed:23340744). Promotes lateral root development (PubMed:16359384). Triggers the expression of senescence-associated genes during age-, salt- and dark-induced senescence through a regulatory network that may involve cross-talk with salt- and H(2)O(2)-dependent signaling pathways (PubMed:9351240, PubMed:15295076, PubMed:20113437, PubMed:21303842). Regulates also genes during seed germination (PubMed:20113437). Regulates positively aging-induced cell death (PubMed:19229035). Involved in age-related resistance (ARR) against Pseudomonas syringae pv. tomato and Hyaloperonospora arabidopsidis (PubMed:19694953). Antagonizes GLK1 and GLK2 transcriptional activity, shifting the balance from chloroplast maintenance towards deterioration during leaf senescence (PubMed:23459204). Promotes the expression of senescence-associated genes, including ENDO1/BFN1, SWEET15/SAG29 and SINA1/At3g13672, during senescence onset (PubMed:23340744). {ECO:0000269|PubMed:15295076, ECO:0000269|PubMed:16359384, ECO:0000269|PubMed:19229035, ECO:0000269|PubMed:19694953, ECO:0000269|PubMed:20113437, ECO:0000269|PubMed:21303842, ECO:0000269|PubMed:23340744, ECO:0000269|PubMed:23459204, ECO:0000269|PubMed:9351240}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: High levels during senescence (e.g. age-, salt- and dark-related) (PubMed:19229035, PubMed:20113437, PubMed:21511905, PubMed:22930749). By salt stress in an ethylene- and auxin-dependent manner (PubMed:16359384, PubMed:19608714, PubMed:20113437, PubMed:20404534). Induced by H(2)O(2) (PubMed:20404534). Accumulates in response to abscisic acid (ABA), ethylene (ACC) and auxin (NAA) (PubMed:16359384, PubMed:19608714). Repressed by high auxin (IAA) levels (PubMed:21511905). Age-related resistance (ARR)-associated accumulation (PubMed:19694953). Repressed by miR164 (PubMed:19229035). {ECO:0000269|PubMed:16359384, ECO:0000269|PubMed:19229035, ECO:0000269|PubMed:19608714, ECO:0000269|PubMed:19694953, ECO:0000269|PubMed:20113437, ECO:0000269|PubMed:20404534, ECO:0000269|PubMed:21511905, ECO:0000269|PubMed:22930749}.
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801540.12e-90NAC domain-containing protein 79-like
SwissprotQ9FKA02e-65NAC92_ARATH; NAC domain-containing protein 92
SwissprotQ9FLJ23e-65NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A1E5V4C49e-96A0A1E5V4C4_9POAL; NAC domain-containing protein 79
STRINGSi030284m1e-86(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2792435
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Manacorda CA, et al.
    Salicylic acid determines differential senescence produced by two Turnip mosaic virus strains involving reactive oxygen species and early transcriptomic changes.
    Mol. Plant Microbe Interact., 2013. 26(12): p. 1486-98
    [PMID:23945002]
  3. Khan M,Rozhon W,Poppenberger B
    The role of hormones in the aging of plants - a mini-review.
    Gerontology, 2014. 60(1): p. 49-55
    [PMID:24135638]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  5. Bohner A,Kojima S,Hajirezaei M,Melzer M,von Wirén N
    Urea retranslocation from senescing Arabidopsis leaves is promoted by DUR3-mediated urea retrieval from leaf apoplast.
    Plant J., 2015. 81(3): p. 377-87
    [PMID:25440717]
  6. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  7. Kim H, et al.
    Circadian control of ORE1 by PRR9 positively regulates leaf senescence in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(33): p. 8448-8453
    [PMID:30065116]