PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00112.1.g00110.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 228aa    MW: 25351.8 Da    PI: 5.3125
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00112.1.g00110.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM74.62.4e-234310570129
                           NAM  70 tgkrknratksgyWkatgkdkevlskkgel...vglkktLvfykgrapkgektdWvmheyrle 129
                                   ++ r nrat++g+Wkatgkdke+++++  l   vg+kktLvfy+grapkgekt W+mheyrle
  Zmw_sc00112.1.g00110.1.sm.mk  43 NEGRINRATNTGFWKATGKDKEIYQASAMLptiVGMKKTLVFYTGRAPKGEKTGWIMHEYRLE 105
                                   57899********************74433666****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100527.0141142IPR003441NAC domain
SuperFamilySSF1019411.57E-3219142IPR003441NAC domain
PfamPF023654.7E-1722104IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MADHQEQEGI RGGVDDCCMN LPPGFRIHPY DEEIITFYLM PKNEGRINRA TNTGFWKATG  60
KDKEIYQASA MLPTIVGMKK TLVFYTGRAP KGEKTGWIMH EYRLEGSGKL YFPTSSSNST  120
ISKGVPDPHA FHEWVICKVF KSSRNKEVHV PQSEEARANN DIDQSTMSFS TSIQFSIGPE  180
DDFLVELGVL CPNMDPTMPF YSTTDASTSV APMMPPMTSM GTMGIDGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-191914115164NO APICAL MERISTEM PROTEIN
1ut4_B3e-191914115164NO APICAL MERISTEM PROTEIN
1ut7_A3e-191914115164NO APICAL MERISTEM PROTEIN
1ut7_B3e-191914115164NO APICAL MERISTEM PROTEIN
3swm_A3e-191914318169NAC domain-containing protein 19
3swm_B3e-191914318169NAC domain-containing protein 19
3swm_C3e-191914318169NAC domain-containing protein 19
3swm_D3e-191914318169NAC domain-containing protein 19
3swp_A3e-191914318169NAC domain-containing protein 19
3swp_B3e-191914318169NAC domain-containing protein 19
3swp_C3e-191914318169NAC domain-containing protein 19
3swp_D3e-191914318169NAC domain-containing protein 19
4dul_A3e-191914115164NAC domain-containing protein 19
4dul_B3e-191914115164NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801540.13e-54NAC domain-containing protein 79-like
SwissprotQ9FLJ28e-32NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A1E5V4C42e-56A0A1E5V4C4_9POAL; NAC domain-containing protein 79
STRINGPavir.Ba02955.1.p3e-49(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2792435
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]