PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00103.1.g00160.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 131aa    MW: 15027.4 Da    PI: 10.757
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00103.1.g00160.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA29.31.2e-091145135
                          GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                                  C +C + +Tp+WR     +++LCnaC ++ r  g+
  Zmw_sc00103.1.g00160.1.am.mk 11 CLQCDSAETPQWRLRLLRQIMLCNACDVRLRADGV 45
                                  899***********************999998776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.095559IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.09E-9553No hitNo description
SMARTSM004012.8E-5556IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.107.3E-9659IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.1E-71145IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MVRPTKKMKR CLQCDSAETP QWRLRLLRQI MLCNACDVRL RADGVRRETE QRAAQRRARH  60
AAACGAGLTG SWQALVKDHQ PVTLFLQVDL HRRCGYRAVH QVRGGVDQQV AEPAVAMPWA  120
TMNEQHREIF I
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2494125