PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00085.1.g00050.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 401aa    MW: 44192.6 Da    PI: 6.8035
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00085.1.g00050.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.86.1e-11244288554
                                   HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                           HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                   h   Er+RR+++N++f  Lr++lP+      +K + a++L +A +Y++ L
  Zmw_sc00085.1.g00050.1.am.mk 244 HVLSERKRREKLNDSFKVLRTVLPPG-----TKKDRASTLIRARDYVNTL 288
                                   7789********************97.....79*************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.40E-13237293No hitNo description
SuperFamilySSF474592.09E-15238307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.227239288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-13243302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-8244288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-12245294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MWRGTVSPAG EPAMDNWSWM PLHGGNGDGA MDSERSYGSG QHEEQDVALI SSHMQQQQLK  60
QSWAQSHMLM DTEVDGYAAT VPPIPSPSST TFCSNSDGSP DESSLLMLTG SATTTTSFLQ  120
PVEVSSLQSM PLSPIAYDDD HGLRFSSIDT ILNLDDLIAR QPHQEQARRK NGHEPRGAFR  180
PYVRHLSPRK NLKPGTCGQR AFRAAMSALT RMHVARLAHW QSVRMKMAAP PPPVGNSNYN  240
QLQHVLSERK RREKLNDSFK VLRTVLPPGT KKDRASTLIR ARDYVNTLKS KVSELEEKNK  300
MLVESQLHGD NGNEQDYNSG EQIEVEIIKT ASAEEESQEF RLKIAVGSGQ NAMVDSVVTI  360
LKSFKEIGDV SLMAMDTRSS SSGLGPGKDF QIAAVPFQAT V
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1247252ERKRRE
2248253RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809512.19e-99putative transcription factor bHLH041 isoform X1
TrEMBLA0A1E5UQ251e-100A0A1E5UQ25_9POAL; Uncharacterized protein
STRINGSi024546m9e-96(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182