PlantTFDB
Plant Transcription Factor Database
PlantRegMap/PlantTFDB v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00060.1.g00540.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 414aa    MW: 45017.7 Da    PI: 7.5766
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00060.1.g00540.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.55.8e-14237282555
                                   HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   h + Er+RR+++N++f+ L+++lP+       K +K +iL +A eYI+sL+
  Zmw_sc00060.1.g00540.1.sm.mk 237 HMISERKRREKLNDSFQALKTVLPPG-----SKKDKTSILIRAREYIRSLE 282
                                   8899********************95.....4999**************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.945232281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.69E-13234282No hitNo description
SuperFamilySSF474596.41E-16234299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16236299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-11237282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-12238287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MDSSWFHGYA TANAAGNNGF MCGYAASCTP AELQHKEVEE EEMLISSQIQ HHLNQISMHM  60
NMDDEVVYDG VLDIQEHPTM VDDLLDPNHA TSFPSSSSSS SLSLRSGSFS CSPNSSAQVF  120
GAPAPAASGH YPEVSSHVPL PPAAPYTNVH VSTAPLAATP PAAGKQASAF KSYAQHLGPR  180
RQPTKPGACG QKMFKTAMSV LSRMHMAASA RYNQQYYYQQ ASAEAVATPP SVNQLQHMIS  240
ERKRREKLND SFQALKTVLP PGSKKDKTSI LIRAREYIRS LESKASELEE KNKSLESRLT  300
GHRGSQAGAD DADADKKVQI EITRAAKECW AVEPRDLCTL KIVVRSRCNM TDVVLRTLQC  360
LKDQAGDDVN LVSMNTSGSS AGPPQTSSSP RAVLTMQIKA RDTCYVLARQ MIDV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1240245ERKRRE
2241246RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971740.11e-128putative transcription factor bHLH041
TrEMBLA0A3L6R5J51e-133A0A3L6R5J5_PANMI; Uncharacterized protein
STRINGSi001328m1e-128(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182