PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00060.1.g00260.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 638aa    MW: 68184.6 Da    PI: 6.611
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00060.1.g00260.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.48.1e-16390436455
                                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                      hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k Lq
  Zmw_sc00060.1.g00260.1.sm.mkhc 390 VHNLSERRRRDRINEKMRALQELIPNC-----NKIDKASMLDEAIEYLKTLQ 436
                                     5*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.85E-17383440No hitNo description
SuperFamilySSF474591.96E-20384445IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.981386435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-13390436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-20390444IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-17392441IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 638 aa     Download sequence    Send to blast
MVYSADACVC PPVHGCRSDG NDFAELLWEN GQAVVHGRRK QPLTAFPPFT CGGASSSKAQ  60
EKHPGSDPVA LLKTTGVYGA GTMAPSAHDL YSGLDTSRGN GDLDDTVPWI HYPIIEDDDE  120
GAAPALADSY SPDFFSELQA AAAVAVNLTP PPPSVQHTAD NRSAGAATMA GEPEPSKESR  180
RISVSAPRPE PQAEFKANKQ PRLGGGGDAL MNFSLFSRPA AMARASLQQS AQRPPPPLGT  240
DKPPGVTVTS STRVESTVVQ SSSGPRTAPV HTDQRMAWPQ AKEVRFACTA APTSMAAGIM  300
QQELPRDRIA NDMAPQRRVE AKKVPEAAIA ASSVCSGNGA GIGNDESWRQ QKRKSQAECS  360
ASQDDDLEDE SGGLRRSGSR STKRSRTAEV HNLSERRRRD RINEKMRALQ ELIPNCNKID  420
KASMLDEAIE YLKTLQLQVQ MMSMGSGLCI PPMLLPPTMQ HLQIPTMAHF PHLGMGLGYG  480
MGIFDMNSTT TVPLPPMPGA HFPCQMIPGT APHAIGIPGR NTLPMFGVPG QPIHPLVPGV  540
RPFPSLASLP VRPNLAPQVS ATVAYMVQEQ QQVSNQQQQS LNDEGTQGAS TRDPQIQTVL  600
QVDNQHFSVP SSTQSESSHF LDSGGDKTNT AVRNGVET
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1394399ERRRRD
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269|PubMed:17485859}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269|PubMed:17485859}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967640.10.0transcription factor APG isoform X1
RefseqXP_004967641.10.0transcription factor APG isoform X1
RefseqXP_004967642.10.0transcription factor APG isoform X1
RefseqXP_004967643.10.0transcription factor APG isoform X1
RefseqXP_004967644.10.0transcription factor APG isoform X1
RefseqXP_022682497.10.0transcription factor APG isoform X1
SwissprotQ0JNI90.0PIL15_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15
TrEMBLA0A3L6R2670.0A0A3L6R267_PANMI; Transcription factor APG-like isoform X1
STRINGSi000700m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35273775
Publications ? help Back to Top
  1. Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T
    Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa.
    Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91
    [PMID:17485859]
  2. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]