PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00049.1.g00340.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 482aa    MW: 53165.9 Da    PI: 4.9208
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00049.1.g00340.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.93.6e-34271182101
                                     HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSE CS
                    HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiw 79 
                                     Fl k+ye+++d++++e++sws ++  sfvv++++efa ++Lp+yFkhsn++SF+RQLn+YgF+k++ e+         w
  Zmw_sc00049.1.g00340.1.sm.mkhc  27 FLLKTYEMVDDPSTDEVVSWSdASDASFVVWNSTEFAARLLPTYFKHSNLSSFIRQLNTYGFRKIDPER---------W 96 
                                     9********************66679****************************************999.........* PP

                                     EEEESXXXXXXXXXXXXXXXXX CS
                    HSF_DNA-bind  80 eFkhksFkkgkkellekikrkk 101
                                     eF+++ F kg+k+ll++i+r+k
  Zmw_sc00049.1.g00340.1.sm.mkhc  97 EFANEFFVKGQKHLLKNIHRRK 118
                                     ********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.8E-3523117IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467859.98E-3323117IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.9E-5823117IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.7E-3027117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-182750IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-186678IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406791IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-187991IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MEVAASGARG STAGGGGGGG GGGPAPFLLK TYEMVDDPST DEVVSWSDAS DASFVVWNST  60
EFAARLLPTY FKHSNLSSFI RQLNTYGFRK IDPERWEFAN EFFVKGQKHL LKNIHRRKPI  120
HSHSHQPGAL PDNARASFED EIDRLSREKA ALQAELWKFS QQQSGATIQI EDLERRVLDM  180
EQRQVKMLNF LQQASKNPQF VNKLVKMAET SPIFSDAYHK KRRLPGLDYG TESTEITSFY  240
DDHSSTSRQE MGNLLNQHFS DKLKLGLCSA VAESNLITLS TQSSHEDNGS ANGKLPDCDR  300
VSIECLPLVP QMMELSDTGT SICPSKSSCF TTAVIDEGLL PCQLNLTLAS CSMDAERNQT  360
PNANGNSINQ DQGTENPLVA ATTTPMEMDD GLSRHHDDSH QRTPNDADSA AAMTTPRGNA  420
QVSTEAPPAP PAVVNDKFWE QFLTERPGCS ETEEASSTQR DPSRKQIEDT TNDRTDMQQL  480
KL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5v_D9e-2371171129Heat shock factor protein 1
5d5v_B9e-2371171129Heat shock factor protein 1
5d5u_B9e-2371171129Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952518.10.0PREDICTED: heat stress transcription factor A-5
SwissprotQ6K6S50.0HSFA5_ORYSJ; Heat stress transcription factor A-5
TrEMBLA0A0D9VG520.0A0A0D9VG52_9ORYZ; Uncharacterized protein
STRINGSi019082m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90003241