PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00043.1.g00390.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 255aa    MW: 27458.9 Da    PI: 6.9962
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00043.1.g00390.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.71.1e-1693142355
                           AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   + GVr ++ +g+++AeIrd + +g  +r+++g+f+t+e Aa a+++a+ + +g
  Zmw_sc00043.1.g00390.1.sm.mk  93 FIGVRKRP-WGKFAAEIRDSTRRG--ARVWIGTFDTPEAAALAYDQAAFAARG 142
                                   78******.**********43343..**********************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.7E-3092156IPR001471AP2/ERF domain
PROSITE profilePS5103221.32592150IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-2093152IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-2793151IPR001471AP2/ERF domain
CDDcd000184.92E-1293127No hitNo description
PRINTSPR003673.9E-893104IPR001471AP2/ERF domain
PfamPF008471.6E-1294142IPR001471AP2/ERF domain
PRINTSPR003673.9E-8116132IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MEQHLIQHPS HAAVAQHGSM PPPPFGTGDS VDVKMHLEAL MLFLEVEADE SSDSLSSSSS  60
RDSSLQAGTE SVTATACDAH QCQGSSTAVE KPFIGVRKRP WGKFAAEIRD STRRGARVWI  120
GTFDTPEAAA LAYDQAAFAA RGASAVLNFP VECVQESLRP LALPDAAGGG SPILALKRRH  180
SKRTRRSKLS LSSNDLIRPQ RRKARRCSGE SSYSTPAVVA HALETPVCRC GVVELEDLGA  240
DYLEELLRVS SELQH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-23931531575Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199205QRRKARR
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11950980}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Weakly induced by Pseudomonas syringae tomato (avirulent avrRpt2 strain), but also by mock inoculation. {ECO:0000269|PubMed:11950980}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022685222.15e-58LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF094-like
SwissprotQ8VYM04e-41ERF93_ARATH; Ethylene-responsive transcription factor 15
TrEMBLA0A2T7CMG44e-57A0A2T7CMG4_9POAL; Uncharacterized protein
STRINGSi033089m2e-51(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang H, et al.
    Arabidopsis AtERF15 positively regulates immunity against Pseudomonas syringae pv. tomato DC3000 and Botrytis cinerea.
    Front Plant Sci, 2015. 6: p. 686
    [PMID:26388886]