PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00005.1.g00200.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 606aa    MW: 68516.9 Da    PI: 4.8499
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00005.1.g00200.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS241.73.1e-742385583321
                          GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 
                                   +lL++cA+av++++++ a +lL+++++ as +g+++qRla +f+++L+arla+++++l +    ++ s   ++e l a++l
  Zmw_sc00005.1.g00200.1.am.mk 238 TLLTHCAQAVAANNHASAWQLLNQIKQDASTTGNATQRLARCFAKGLEARLAGTGTQLWQFRMGEPPS---TVEYLEAYQL 315
                                   68***************************************************999999766666665...99******** PP

                          GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQ..WpaLlqaLasRpegppslRiTgvgspesg..skeelee 160
                                   ++ v+ + k++     ++I++ + g+++vHi+D+++ + +Q  W+ Ll+ La+R++g+p+++iT++++p +    +e++ee
  Zmw_sc00005.1.g00200.1.am.mk 316 YVSVCSFDKVALCFSVKTIVDTIVGKSKVHIVDYGLDYAFQlrWADLLELLANREGGSPEVKITAINHPGHWfyPEEQMEE 396
                                   ***********************************99998888*************************99889******** PP

                          GRAS 161 tgerLakfAeelgvp.fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkv 238
                                   tg+rL+k A+elg++ f+f++ + k++ed+ +++L+++++E+l+Vn +++l +l+desv  ++  +rd+vL+ + +++P v
  Zmw_sc00005.1.g00200.1.am.mk 397 TGSRLHKWAAELGLRyFKFHT-IRKKWEDVCIQDLDTESNEVLIVNDHFNLSTLMDESVFFDDpcPRDAVLSNIAKMRPAV 476
                                   **************77*****.7************************************9999999*************** PP

                          GRAS 239 vvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerl 319
                                   v+    ++ + ++sFl rf  al yy+alfd+l+a++pres++r+++E+el+g  +vn++a eg + ++  e++ +W++r 
  Zmw_sc00005.1.g00200.1.am.mk 477 VIQNVVNCTY-GTSFLSRFRGALFYYMALFDMLDATIPRESKQRVVLEQELFGGYAVNAIASEGVNVVQHPEKYTQWQARN 556
                                   **99999999.679****************************************************************996 PP

                          GRAS 320 ee 321
                                   ++
  Zmw_sc00005.1.g00200.1.am.mk 557 QR 558
                                   65 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.322210591IPR005202Transcription factor GRAS
PfamPF035141.1E-71238558IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MTPTPEEFFV HCLMEQSPPS PSLCPDLPPL PDAYGEGWLF PNEMMLPHIS RMLMEDDTEE  60
KLSDDPALLR VQQPFAEILF DPSFGTDMGN TEGPMDLMQD GSCYQMTAES AFAKGADAVG  120
AFLRGMEEAK TFLPKYGCFR EDDLVSQLFR ESTNHGGPRT NNSKDEAAVS MTDEPMTMTK  180
EQAERDDASE MLDRMMLQGC EKFVRDMEKL RITMANEAEE DRRKDRSNTA RVVVDLPTLL  240
THCAQAVAAN NHASAWQLLN QIKQDASTTG NATQRLARCF AKGLEARLAG TGTQLWQFRM  300
GEPPSTVEYL EAYQLYVSVC SFDKVALCFS VKTIVDTIVG KSKVHIVDYG LDYAFQLRWA  360
DLLELLANRE GGSPEVKITA INHPGHWFYP EEQMEETGSR LHKWAAELGL RYFKFHTIRK  420
KWEDVCIQDL DTESNEVLIV NDHFNLSTLM DESVFFDDPC PRDAVLSNIA KMRPAVVIQN  480
VVNCTYGTSF LSRFRGALFY YMALFDMLDA TIPRESKQRV VLEQELFGGY AVNAIASEGV  540
NVVQHPEKYT QWQARNQRAV RCRTMAPCRR SPPMATPPPA PHRNSLVALP SLMMQESRRE  600
RRGEVP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-262405538315GRAS family transcription factor containing p
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978278.10.0PREDICTED: scarecrow-like protein 33
TrEMBLK3ZDK10.0K3ZDK1_SETIT; Uncharacterized protein
STRINGSi024639m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23131297