PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00004.1.g00230.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LBD
Protein Properties Length: 222aa    MW: 23097.2 Da    PI: 6.2327
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00004.1.g00230.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26094.41.3e-292105199
                          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvy 74 
                                     +C++C+vlr++C++ Cvl+p +     ++ q++++ +v+k+FG++ ++  l a+p ++r+++++sl+yeA+ r+ +Pv+
  Zmw_sc00004.1.g00230.1.sm.mkhc   2 SCNGCRVLRKGCSDACVLRPSIewidgAQPQANATVFVAKFFGRAGLVASLGAVPLQHRPALFRSLLYEACGRTINPVS 80 
                                     6*********************9999888899*********************************************** PP

                          DUF260  75 Gavgvilklqqqleqlkaelallke 99 
                                     Ga+g++++++++l+q++ae++l++e
  Zmw_sc00004.1.g00230.1.sm.mkhc  81 GAIGLMWTGNWDLCQAAAEAVLRGE 105
                                     *******************998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.8991107IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-232101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSDACVLR PSIEWIDGAQ PQANATVFVA KFFGRAGLVA SLGAVPLQHR  60
PALFRSLLYE ACGRTINPVS GAIGLMWTGN WDLCQAAAEA VLRGESLRAL SAIPAAFTDR  120
DMAGLYGNVD VAASSSPEHS SSTPSRKRKN CGRFLAGTDD CQPPAGLLLQ PCELHLCLTP  180
ASLPAGGRPG CGTSNEDSGT TTCEEASGDV EAGVPTLLNL FS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020177395.11e-109LOB domain-containing protein 39-like
TrEMBLA0A3B6JFF01e-107A0A3B6JFF0_WHEAT; Uncharacterized protein
TrEMBLA0A453HER91e-107A0A453HER9_AEGTS; Uncharacterized protein
STRINGTraes_4DS_9575221BB.31e-108(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84503041