PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00002.1.g00550.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 260aa    MW: 28266 Da    PI: 9.4325
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00002.1.g00550.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1401.5e-43111461128
                             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pkkvkaeekewyfFskrdkkyatgkrknrat 78 
                                     lppGfrF+Ptd el+ +yL++++ +++l+++  i++++i+ ++P+dL p     +e e yfF++++ ky +g+r+nrat
  Zmw_sc00002.1.g00550.1.sm.mkhc  11 LPPGFRFRPTDVELILHYLRRRAFESPLPAAVDIPDIRILAHDPSDLlP--PGWSEPERYFFTCKEAKYVKGRRANRAT 87 
                                     79***************************9666**************43..3447789********************* PP

                             NAM  79 ksgyWkatgkdkevlsk.........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                      +gyWkatgk+k+v ++         +  lvg+k++Lvfy+g+ p+g+ktdWvmheyrl
  Zmw_sc00002.1.g00550.1.sm.mkhc  88 GAGYWKATGKEKPVAVAmpaaapgghQAVLVGMKRSLVFYRGKPPSGSKTDWVMHEYRL 146
                                     ***************998888887655556***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.59E-489182IPR003441NAC domain
PROSITE profilePS5100547.1811182IPR003441NAC domain
PfamPF023653.5E-2512146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MATKDSVKSQ LPPGFRFRPT DVELILHYLR RRAFESPLPA AVDIPDIRIL AHDPSDLLPP  60
GWSEPERYFF TCKEAKYVKG RRANRATGAG YWKATGKEKP VAVAMPAAAP GGHQAVLVGM  120
KRSLVFYRGK PPSGSKTDWV MHEYRLAGAG LAPCRRAQAX XXXGKPPAHP DEGWVLCRVF  180
RKKGSADAAG AAAPADAEEE EEEDGAATAS GFIDFFARAD AARRRRASSP MVSSSCLTDS  240
SHEPPQQLCR DQETTSRGSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-351018514171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002443168.11e-114NAC domain-containing protein 83
SwissprotQ9FY932e-50NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A3L6RAA21e-119A0A3L6RAA2_PANMI; NAC domain-containing protein 83
STRINGSb08g014060.11e-114(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63173254
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]