PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma99g00440.1
Common NameZOSMA_99G00440
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family TCP
Protein Properties Length: 400aa    MW: 42937.9 Da    PI: 7.088
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma99g00440.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP121.11.3e-37671896114
              TCP   6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.......... 88 
                      +r++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++++a ++   ++ ++ ++++s            
  Zosma99g00440.1  67 TRTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTIPAIAMsVGGTLKVPTQSPSLMassifqgddv 160
                      89**********************************************************8888855442333333333233333333333333 PP

              TCP  89 .....kaaksaakskksqksaasalnlakes 114
                           k+++s   + ++++ a + +n+++e+
  Zosma99g00440.1 161 asrkrKKCQS--MPAETKTTAVHPHNYQQEQ 189
                      2221111111..1111111111112222221 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.9E-2868187IPR005333Transcription factor, TCP
PROSITE profilePS5136927.14169123IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MEARQKQELR EDDAETDLRM GGGIQDANPL AVFPKPEPVV EERVTPINTV ATLKTGGGRR  60
QAGAVSTRTK DRHTKVEGRG RRIRMPATCA ARIFQLTREL GHKSDGETIR WLLEHAEPAI  120
IAATGTGTIP AIAMSVGGTL KVPTQSPSLM ASSIFQGDDV ASRKRKKCQS MPAETKTTAV  180
HPHNYQQEQS SAAMSMSSGL APIGAVPMWA VSGGRVLSPA LWMLPPPNSA TAATMIPQGG  240
SSTQQQQQQQ QQQQQIFLQQ QQQQIWTAFH HSGSQIINLT ATGPAIPATM FSAVPTLTSL  300
EIPTGSGLQI PMGGFTAEVV AAAGGGGGGQ EPSSFHNHQN RQQKQEHQFM GSSMTSDTSN  360
NYQYQHRVEE DHHDHGDDVS NKEGVQEAVQ PLSQHSPQD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162166RKRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00667PBMTransfer from GSVIVG01027588001Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NHN00.0A0A0K9NHN0_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39123167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.18e-35TCP family protein