PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma94g00330.1
Common NameZOSMA_94G00330
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ARF
Protein Properties Length: 656aa    MW: 72601.2 Da    PI: 8.2357
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma94g00330.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.72.5e-24119220199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW++Fv+ ++L +gD++vF   + 
  Zosma94g00330.1 119 FAKTLTQSDANNGGGFSVPRYCAETIfptldhsADPPVQ--TVLARDVHGEQWKFRHIYRGTPRRHLLTTGWSSFVNTKKLMAGDSIVFL--RA 208
                      89***********************9****986444444..899**********************************************..44 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      +++el+v+++r+
  Zosma94g00330.1 209 ENGELRVGIRRA 220
                      9999******97 PP

2Auxin_resp111.11.1e-36288371183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                      aa+ a+++ +FevvY+Prast+eF+vk++ v++a ++++++GmRfkmafetedss++++ +Gt++gv+ +dp+rWp+S Wr L+
  Zosma94g00330.1 288 AANLAANGHPFEVVYYPRASTPEFCVKASAVKAANRMHWAPGMRFKMAFETEDSSRISWfMGTIAGVQYSDPIRWPHSLWRILQ 371
                      7899******************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-36115223IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.23E-29116221IPR015300DNA-binding pseudobarrel domain
CDDcd100171.88E-21118219No hitNo description
PfamPF023622.5E-22119220IPR003340B3 DNA binding domain
PROSITE profilePS5086313.62119221IPR003340B3 DNA binding domain
SMARTSM010194.0E-23119221IPR003340B3 DNA binding domain
PfamPF065076.4E-32288371IPR010525Auxin response factor
PROSITE profilePS5174518.543558639IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    Send to blast
MKEPDKCLDS QLWHACAGGM VQMPPVNSKV CYFPQGHAEH AQGNVDFGST RRIPSQILSR  60
VTSIKYMADP DTDEVFSKIR LIPITASNKL NNEMDIVEDD DDDDDLGLGV EAPEKLASFA  120
KTLTQSDANN GGGFSVPRYC AETIFPTLDH SADPPVQTVL ARDVHGEQWK FRHIYRGTPR  180
RHLLTTGWSS FVNTKKLMAG DSIVFLRAEN GELRVGIRRA KRGIGVGPDS PSGWNTPSNI  240
YAPHYSTGFS VFLREEENKL VKNNGIHGTG GGLGKGKRRV TTESVIEAAN LAANGHPFEV  300
VYYPRASTPE FCVKASAVKA ANRMHWAPGM RFKMAFETED SSRISWFMGT IAGVQYSDPI  360
RWPHSLWRIL QVSWDEPDLL QNVKRINPWL VEIVSNLKPM HLSSFVPTLQ PRKKLRMNNH  420
PDFSFDGQYP TPVFSVGSPI NNNNLYLPFR SFTKNITAGS TPSSIQGARH AQIGISLSDK  480
LHPRISTNHQ QDNNISCLLT IGNSSPETTK SSSSLSSPTS PSSFLLFGKT ILTEKQMRTV  540
SNGVDVGDNL LAKLSLETGH CKVFMESEDV GRTLDLSSLS SFDEMCSKLA DMFDIKKSDM  600
RADHVHYRDS SGSVKLAGDV PFGDLKKSAR RLMILLDANT TRLVENSNNQ MQMHI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-79839251388Auxin response factor 5
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1410416PRKKLRM
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010920443.20.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A0K9NIQ00.0A0A0K9NIQ0_ZOSMR; Auxin response factor
STRINGXP_008791554.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]