PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma93g00240.1
Common NameZOSMA_93G00240
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family LBD
Protein Properties Length: 204aa    MW: 22511.2 Da    PI: 5.9598
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma93g00240.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.83.8e-3813110197
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      +C aCk+lrrkC ++Cv+apyf ++q + +f  vhk+FGasnv+kll ++p ++r++a++++ +eA+ar+rdPvyG+v+ i++lq+q+++l++e
  Zosma93g00240.1  13 SCGACKFLRRKCMEGCVFAPYFSHDQgALHFSSVHKVFGASNVSKLLLHIPLHRRSEAAATISFEAQARMRDPVYGCVAYIFSLQRQVARLQQE 106
                      6*************************889***************************************************************** PP

           DUF260  94 lall 97 
                      +++l
  Zosma93g00240.1 107 IDSL 110
                      9865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.72412114IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-3613110IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MAGELGMVVV PSSCGACKFL RRKCMEGCVF APYFSHDQGA LHFSSVHKVF GASNVSKLLL  60
HIPLHRRSEA AATISFEAQA RMRDPVYGCV AYIFSLQRQV ARLQQEIDSL TMNPSTYNNT  120
NIWNNGGVSE FTPNQHGYYV NFSSSNSDAT LAVDRSTQPD HEDDHPAELH PLFREAIDRL  180
EHNLFSDIVE DDPPAVGMYG CVG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002277994.19e-50PREDICTED: LOB domain-containing protein 33
RefseqXP_010262592.18e-50PREDICTED: LOB domain-containing protein 33-like
SwissprotQ9LHS81e-47LBD33_ARATH; LOB domain-containing protein 33
TrEMBLA0A0K9NKR41e-153A0A0K9NKR4_Z
STRINGVIT_13s0019g02060.t013e-49(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25013893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.16e-49LOB domain-containing protein 33