PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma88g00680.1
Common NameZOSMA_88G00680
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family NAC
Protein Properties Length: 319aa    MW: 36697.9 Da    PI: 6.8426
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma88g00680.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM154.93.5e-48511991128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k....................kvkaeekewyfFskrdkkyatgkr 73 
                      lp GfrF P+deelv++yL+kk++++++ +  ++ evd++++ePw+Lp +                     +k + +ewyfFs rd+ky+tg+r
  Zosma88g00680.1  51 LPLGFRFFPNDEELVCHYLCKKINKERVCE-GTLVEVDLHTCEPWELPgQylrsnislhvhfiylscpadLAKLSATEWYFFSFRDRKYSTGSR 143
                      699************************777.78***************54899999999999999888864445889***************** PP

              NAM  74 knratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +nratk+gyWkatgkd++v++  +++lvg++ktLvfy+grap+g kt+Wvmhe+r+
  Zosma88g00680.1 144 TNRATKTGYWKATGKDRSVYDPmTHALVGMRKTLVFYHGRAPNGIKTSWVMHEFRM 199
                      *********************978888***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-5343218IPR003441NAC domain
PROSITE profilePS5100552.77951218IPR003441NAC domain
PfamPF023652.9E-2552199IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MITTAQHPNL YQFNSIQATY LLATLLLGPT GRTDKVLRQS SMGLNQVESR LPLGFRFFPN  60
DEELVCHYLC KKINKERVCE GTLVEVDLHT CEPWELPGQY LRSNISLHVH FIYLSCPADL  120
AKLSATEWYF FSFRDRKYST GSRTNRATKT GYWKATGKDR SVYDPMTHAL VGMRKTLVFY  180
HGRAPNGIKT SWVMHEFRME TLHMPPKEDW VLCRVFSKRK EEIPSFQVLD SCTSSSVMES  240
SSFMDAVPTT MPTMAGYNEH QFATMFTTNF PIQQQQEEEN NIILNDINNK SLMNLEITPQ  300
YNEYNGLLLG DQDMTSLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-444622110171Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010906799.19e-91NAC domain-containing protein 21/22
TrEMBLA0A0K9NKV70.0A0A0K9NKV7_ZOSMR; Putative NAC domain-containing protein 21/22
STRINGGSMUA_Achr8P18980_0017e-89(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69738166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.12e-76NAC domain containing protein 74